Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu031496.1 Olea europaea HOM05D004892 ORTHO05D005818 1.0e-63 246.5 117 100.0
Oeu013384.1 Olea europaea HOM05D004892 ORTHO05D005818 1.8e-60 235.7 116 96.6
MSTRG.13714 Avicennia marina HOM05D004892 ORTHO05D005818 4.5e-56 221.1 116 87.9
Oeu041373.1 Olea europaea HOM05D004892 ORTHO05D005818 1.0e-55 219.9 116 88.8
Migut.E00629 Erythranthe guttata HOM05D004892 ORTHO05D005818 1.1e-54 216.5 116 85.3
RcHm_v2.0_Chr7g0186971 Rosa chinensis HOM05D004892 ORTHO05D005818 4.7e-53 211.1 116 85.3
Sopen08g031330 Solanum pennellii HOM05D004892 ORTHO05D005818 4.7e-53 211.1 116 83.6
Cc08_g16750 Coffea canephora HOM05D004892 ORTHO05D005818 6.1e-53 210.7 115 85.2
PGSC0003DMG400012239 Solanum tuberosum HOM05D004892 ORTHO05D005818 6.1e-53 210.7 116 83.6
CiPaw.11G112200 Carya illinoinensis HOM05D004892 ORTHO05D005818 8.0e-53 210.3 116 84.5
Prupe.5G129800 Prunus persica HOM05D004892 ORTHO05D005818 8.0e-53 210.3 116 82.8
TWI15G0468 Tripterygium wilfordii HOM05D004892 ORTHO05D005818 1.8e-52 209.1 116 83.6
CSS0012078 Camellia sinensis var. sinensis HOM05D004892 ORTHO05D005818 2.3e-52 208.8 116 82.8
Eucgr.D01681 Eucalyptus grandis HOM05D004892 ORTHO05D005818 2.3e-52 208.8 116 81.9
PSO782G2573 Papaver somniferum HOM05D004892 ORTHO05D005818 2.3e-52 208.8 116 83.6
CAN.G567.88 Capsicum annuum HOM05D004892 ORTHO05D005818 3.0e-52 208.4 116 83.6
Solyc08g083110.4 Solanum lycopersicum HOM05D004892 ORTHO05D005818 3.0e-52 208.4 116 81.9
Hma1.2p1_0436F.1_g152760 Hydrangea macrophylla HOM05D004892 ORTHO05D005818 4.0e-52 208.0 116 82.8
Hma1.2p1_3123F.1_g332876 Hydrangea macrophylla HOM05D004892 ORTHO05D005818 4.0e-52 208.0 116 82.8
Rhsim02G0252200 Rhododendron simsii HOM05D004892 ORTHO05D005818 4.0e-52 208.0 116 82.8
PSO566G0075 Papaver somniferum HOM05D004892 ORTHO05D005818 5.2e-52 207.6 116 82.8
FvH4_5g10890 Fragaria vesca HOM05D004892 ORTHO05D005818 6.7e-52 207.2 116 81.9
FAN18G2505 Fragaria x ananassa HOM05D004892 ORTHO05D005818 6.7e-52 207.2 116 81.9
QL02p028086 Quercus lobata HOM05D004892 ORTHO05D005818 6.7e-52 207.2 116 83.6
TAR375G0147 Trochodendron aralioides HOM05D004892 ORTHO05D005818 6.7e-52 207.2 116 81.9
MD14G1126800 Malus domestica HOM05D004892 ORTHO05D005818 8.8e-52 206.8 116 81.0
FAN04G1760 Fragaria x ananassa HOM05D004892 ORTHO05D005818 1.2e-51 206.5 116 81.9
Sabra01G0060900 Salix brachista HOM05D004892 ORTHO05D005818 1.2e-51 206.5 116 81.9
Ciclev10020136m.g Citrus clementina HOM05D004892 ORTHO05D005818 1.5e-51 206.1 116 81.0
Lalb_Chr02g0149571 Lupinus albus HOM05D004892 ORTHO05D005818 1.5e-51 206.1 116 81.0
PGR031G3120 Punica granatum HOM05D004892 ORTHO05D005818 1.5e-51 206.1 116 81.0
COL.COLO4_10796 Corchorus olitorius HOM05D004892 ORTHO05D005818 4.4e-51 204.5 116 81.0
Dinv12930 Davidia involucrata HOM05D004892 ORTHO05D005818 7.5e-51 203.8 116 82.8
Gohir.A12G240000 Gossypium hirsutum HOM05D004892 ORTHO05D005818 7.5e-51 203.8 116 82.8
Gohir.D12G241300 Gossypium hirsutum HOM05D004892 ORTHO05D005818 7.5e-51 203.8 116 82.8
Gorai.008G258500 Gossypium raimondii HOM05D004892 ORTHO05D005818 7.5e-51 203.8 116 82.8
Atru.chr9.1882 Acer truncatum HOM05D004892 ORTHO05D005818 1.3e-50 203.0 116 79.3
Aqoxy7G03851 Aquilegia oxysepala HOM05D004892 ORTHO05D005818 1.3e-50 203.0 116 81.0
Medtr1g077890 Medicago truncatula HOM05D004892 ORTHO05D005818 1.3e-50 203.0 116 80.2
HanXRQChr17g0534241 Helianthus annuus HOM05D004892 ORTHO05D005818 1.7e-50 202.6 116 80.2
Potri.001G084000 Populus trichocarpa HOM05D004892 ORTHO05D005818 2.2e-50 202.2 116 79.3
CSS0044312 Camellia sinensis var. sinensis HOM05D004892 ORTHO05D005818 2.8e-50 201.8 116 80.2
CiPaw.12G077300 Carya illinoinensis HOM05D004892 ORTHO05D005818 2.8e-50 201.8 116 81.0
Sc01g0010700 Simmondsia chinensis HOM05D004892 ORTHO05D005818 2.8e-50 201.8 116 81.9
Cpa.g.sc948.1 Carica papaya HOM05D004892 ORTHO05D005818 3.7e-50 201.4 116 81.9
Duzib084G0863 Durio zibethinus HOM05D004892 ORTHO05D005818 4.8e-50 201.1 116 81.0
EL10Ac5g12428 Beta vulgaris HOM05D004892 ORTHO05D005818 6.3e-50 200.7 116 81.0
AUR62019918 Chenopodium quinoa HOM05D004892 ORTHO05D005818 6.3e-50 200.7 116 81.0
Thecc.03G221100 Theobroma cacao HOM05D004892 ORTHO05D005818 6.3e-50 200.7 116 81.0
HanXRQChr06g0166781 Helianthus annuus HOM05D004892 ORTHO05D005818 8.2e-50 200.3 116 78.4
arahy.Tifrunner.gnm1.ann1.V9A8GQ Arachis hypogaea HOM05D004892 ORTHO05D005818 1.4e-49 199.5 116 77.6
AUR62007054 Chenopodium quinoa HOM05D004892 ORTHO05D005818 1.4e-49 199.5 116 80.2
Manes.01G056204 Manihot esculenta HOM05D004892 ORTHO05D005818 1.4e-49 199.5 116 81.0
Duzib068G1057 Durio zibethinus HOM05D004892 ORTHO05D005818 2.4e-49 198.7 116 79.3
Duzib205G1585 Durio zibethinus HOM05D004892 ORTHO05D005818 3.1e-49 198.4 116 80.2
ECA246G1551 Erigeron canadensis HOM05D004892 ORTHO05D005818 3.1e-49 198.4 116 77.6
PSO782G5046 Papaver somniferum HOM05D004892 ORTHO05D005818 3.1e-49 198.4 116 78.4
CANSAT21G1008 Cannabis sativa HOM05D004892 ORTHO05D005818 4.1e-49 198.0 116 78.4
Gohir.D09G183400 Gossypium hirsutum HOM05D004892 ORTHO05D005818 5.3e-49 197.6 116 78.4
Gorai.006G205800 Gossypium raimondii HOM05D004892 ORTHO05D005818 5.3e-49 197.6 116 78.4
Lalb_Chr24g0402781 Lupinus albus HOM05D004892 ORTHO05D005818 5.3e-49 197.6 116 77.6
Hund11347 Selenicereus undatus HOM05D004892 ORTHO05D005818 5.3e-49 197.6 116 81.9
CAN.G792.25 Capsicum annuum HOM05D004892 ORTHO05D005818 7.0e-49 197.2 117 80.3
CDE04G3418 Ceratophyllum demersum HOM05D004892 ORTHO05D005818 7.0e-49 197.2 116 78.4
Nn3g18808 Nelumbo nucifera HOM05D004892 ORTHO05D005818 7.0e-49 197.2 116 80.2
PGSC0003DMG400005863 Solanum tuberosum HOM05D004892 ORTHO05D005818 7.0e-49 197.2 116 78.4
Glyma.13G001200 Glycine max HOM05D004892 ORTHO05D005818 9.1e-49 196.8 116 79.3
Lsat_1_v5_gn_3_14400 Lactuca sativa HOM05D004892 ORTHO05D005818 1.2e-48 196.4 116 76.7
Solyc08g008580.3 Solanum lycopersicum HOM05D004892 ORTHO05D005818 2.0e-48 195.7 116 79.3
Sopen08g004400 Solanum pennellii HOM05D004892 ORTHO05D005818 2.0e-48 195.7 116 79.3
TPR.G34814 Trifolium pratense HOM05D004892 ORTHO05D005818 2.0e-48 195.7 116 77.6
Ah.07g197980 Amaranthus hybridus HOM05D004892 ORTHO05D005818 2.7e-48 195.3 116 77.6
Gohir.A09G188366 Gossypium hirsutum HOM05D004892 ORTHO05D005818 4.5e-48 194.5 116 76.7
Psat6g052400 Pisum sativum HOM05D004892 ORTHO05D005818 4.5e-48 194.5 116 75.9
Ah.12g053210 Amaranthus hybridus HOM05D004892 ORTHO05D005818 5.9e-48 194.1 116 77.6
Glyma.02G087900 Glycine max HOM05D004892 ORTHO05D005818 5.9e-48 194.1 116 78.4
CsaV3_5G001660 Cucumis sativus L. HOM05D004892 ORTHO05D005818 7.7e-48 193.7 116 79.3
arahy.Tifrunner.gnm1.ann1.1FPN7V Arachis hypogaea HOM05D004892 ORTHO05D005818 1.7e-47 192.6 116 76.7
MELO3C013774.2 Cucumis melo HOM05D004892 ORTHO05D005818 1.7e-47 192.6 116 77.6
MELO3C005786.2 Cucumis melo HOM05D004892 ORTHO05D005818 2.2e-47 192.2 116 78.4
Manes.02G002900 Manihot esculenta HOM05D004892 ORTHO05D005818 2.2e-47 192.2 116 76.7
PGR031G2034 Punica granatum HOM05D004892 ORTHO05D005818 2.9e-47 191.8 116 75.0
Phvul.006G012501 Phaseolus vulgaris HOM05D004892 ORTHO05D005818 5.0e-47 191.0 116 76.7
ClCG00G001140 Citrullus lanatus HOM05D004892 ORTHO05D005818 8.5e-47 190.3 116 76.7
ClCG01G001510 Citrullus lanatus HOM05D004892 ORTHO05D005818 8.5e-47 190.3 116 76.7
Glyma.10G172700 Glycine max HOM05D004892 ORTHO05D005818 8.5e-47 190.3 116 75.9
Sed0003804 Sechium edule HOM05D004892 ORTHO05D005818 1.1e-46 189.9 116 75.9
SEGI_17386 Sequoiadendron giganteum HOM05D004892 ORTHO05D005818 1.1e-46 189.9 116 74.1
Lj5g0005738 Lotus japonicus HOM05D004892 ORTHO05D005818 1.9e-46 189.1 116 74.1
Lalb_Chr14g0362651 Lupinus albus HOM05D004892 ORTHO05D005818 1.9e-46 189.1 116 74.1
Duzib084G0098 Durio zibethinus HOM05D004892 ORTHO05D005818 2.5e-46 188.7 116 76.7
Gohir.A09G188550 Gossypium hirsutum HOM05D004892 ORTHO05D005818 3.2e-46 188.3 116 74.1
Phvul.L005001 Phaseolus vulgaris HOM05D004892 ORTHO05D005818 3.2e-46 188.3 116 75.0
Lsat_1_v5_gn_3_14340 Lactuca sativa HOM05D004892 ORTHO05D005818 4.2e-46 188.0 116 75.0
CsaV3_3G000880 Cucumis sativus L. HOM05D004892 ORTHO05D005818 9.4e-46 186.8 116 74.1
Gohir.A09G188500 Gossypium hirsutum HOM05D004892 ORTHO05D005818 9.4e-46 186.8 116 74.1
Gorai.006G205700 Gossypium raimondii HOM05D004892 ORTHO05D005818 1.2e-45 186.4 116 73.3
PGR031G0198 Punica granatum HOM05D004892 ORTHO05D005818 2.1e-45 185.7 116 74.1
SGA_v2.0_scaffold57G20248 Striga asiatica HOM05D004892 ORTHO05D005818 3.6e-45 184.9 116 73.3
HPP92_003298 Vanilla planifolia HOM05D004892 ORTHO05D005818 6.1e-45 184.1 116 74.1
FAN08G1665 Fragaria x ananassa HOM05D004892 ORTHO05D005818 2.3e-44 182.2 103 79.6
Lsat_1_v5_gn_3_14320 Lactuca sativa HOM05D004892 ORTHO05D005818 2.3e-44 182.2 116 72.4
Psat5g108800 Pisum sativum HOM05D004892 ORTHO05D005818 4.0e-44 181.4 116 69.8
CARHR046230 Cardamine hirsuta HOM05D004892 ORTHO05D005818 6.8e-44 180.6 116 73.3
Medtr3g080850 Medicago truncatula HOM05D004892 ORTHO05D005818 2.6e-43 178.7 111 74.8
AL1G56680 Arabidopsis lyrata HOM05D004892 ORTHO05D005818 5.7e-43 177.6 116 70.7
Psat5g110080 Pisum sativum HOM05D004892 ORTHO05D005818 9.8e-43 176.8 116 68.1
AT1G64660 Arabidopsis thaliana HOM05D004892 ORTHO05D005818 2.2e-42 175.6 116 69.8
Aa31LG2G1700 Aethionema arabicum HOM05D004892 ORTHO05D005818 6.3e-42 174.1 116 70.7
THA.LOC104817406 Tarenaya hassleriana HOM05D004892 ORTHO05D005818 6.3e-42 174.1 116 69.0
BcaB07g31489 Brassica carinata HOM05D004892 ORTHO05D005818 8.3e-42 173.7 116 69.0
BcaC04g22597 Brassica carinata HOM05D004892 ORTHO05D005818 1.1e-41 173.3 116 69.0
A09p14480 Brassica napus HOM05D004892 ORTHO05D005818 1.1e-41 173.3 116 69.0
BolC9t54645H Brassica oleracea HOM05D004892 ORTHO05D005818 1.1e-41 173.3 116 69.0
BraA09t37096Z Brassica rapa HOM05D004892 ORTHO05D005818 1.1e-41 173.3 116 69.0
Carub.0002s0007 Capsella rubella HOM05D004892 ORTHO05D005818 1.1e-41 173.3 116 69.8
TPR.G21324 Trifolium pratense HOM05D004892 ORTHO05D005818 1.1e-41 173.3 116 69.0
HPP92_014941 Vanilla planifolia HOM05D004892 ORTHO05D005818 1.4e-41 172.9 116 68.1
C09p17470 Brassica napus HOM05D004892 ORTHO05D005818 1.8e-41 172.6 116 69.0
Sp2g00050 Schrenkiella parvula HOM05D004892 ORTHO05D005818 1.8e-41 172.6 116 69.8
Sabra03G0137000 Salix brachista HOM05D004892 ORTHO05D005818 9.1e-41 170.2 118 65.3
HPP92_014987 Vanilla planifolia HOM05D004892 ORTHO05D005818 2.0e-40 169.1 116 67.2
Pp3c7_23100 Physcomitrium patens HOM05D004892 ORTHO05D005818 7.7e-40 167.2 116 64.7
Potri.003G187032 Populus trichocarpa HOM05D004892 ORTHO05D005818 7.7e-40 167.2 118 63.6
Os10g0517500 Oryza sativa ssp. japonica HOM05D004892 ORTHO05D005818 5.0e-39 164.5 116 67.2
SMO364G0385 Selaginella moellendorffii HOM05D004892 ORTHO05D005818 1.1e-38 163.3 116 64.7
Zm00001eb220180 Zea mays HOM05D004892 ORTHO05D005818 1.1e-38 163.3 116 66.4
Pp3c13_23730 Physcomitrium patens HOM05D004892 ORTHO05D005818 3.3e-38 161.8 116 63.8
SGA_v2.0_scaffold104G30263 Striga asiatica HOM05D004892 ORTHO05D005818 2.0e-35 152.5 116 63.8
MD06G1118700 Malus domestica HOM05D004892 ORTHO05D005818 4.4e-35 151.4 123 60.2
Hund20460 Selenicereus undatus HOM05D004892 ORTHO05D005818 2.1e-29 132.5 112 52.7
Hma1.2p1_0303F.1_g118880 Hydrangea macrophylla HOM05D004892 ORTHO05D005818 1.0e-28 130.2 111 57.7
Cre10.g426152 Chlamydomonas reinhardtii HOM05D004892 ORTHO05D005818 1.4e-28 129.8 116 54.3
TAR374G1712 Trochodendron aralioides HOM05D004892 ORTHO05D005818 6.8e-28 127.5 68 80.9
Pp3c3_14200 Physcomitrium patens HOM05D004892 ORTHO05D005818 8.9e-28 127.1 116 52.6
Migut.E00627 Erythranthe guttata HOM05D004892 ORTHO05D005818 1.2e-24 116.7 65 84.6
AagrBONN_evm.TU.Sc2ySwM_228.5009 Anthoceros agrestis HOM05D004892 ORTHO05D005818 3.3e-22 108.6 110 47.3
Ca_16297_v3 Cicer arietinum L. HOM05D004892 ORTHO05D005818 2.9e-18 95.5 61 63.9
ATR0955G010 Amborella trichopoda HOM05D004892 ORTHO05D005818 3.7e-18 95.1 68 60.3
Nitab4.5_0007001g0050 Nicotiana tabacum HOM05D004892 ORTHO05D005818 1.0e-15 87.0 44 86.4
DCAR_006545 Daucus carota HOM05D004892 ORTHO05D005818 3.9e-15 85.1 44 77.3
Ca_09950_v3 Cicer arietinum L. HOM05D004892 ORTHO05D005818 1.2e-13 80.1 42 81.0
MD11G1108600 Malus domestica HOM05D004892 ORTHO05D005818 5.8e-11 71.2 46 73.9
MD10G1269200 Malus domestica HOM05D004892 ORTHO05D005818 1.4e-09 66.6 43 74.4
TAR374G0899 Trochodendron aralioides HOM05D004892 ORTHO05D005818 2.3e-07 59.3 34 79.4
MCO10G197 Micromonas commoda HOM05D001730 ORTHO05D004519 3.0e-07 58.9 107 32.7
Haze_09175 Corylus avellana HOM05D001824 ORTHO05D007807 1.9e-06 56.2 58 50.0
Cre03.g144627 Chlamydomonas reinhardtii HOM05D001730 ORTHO05D004519 3.3e-06 55.5 107 32.7


User provided reference genes

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