Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 2.4e-167 592.0 291 100.0
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 6.6e-24 115.5 129 55.8
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 3.8e-11 73.2 35 91.4
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 4.9e-11 72.8 35 88.6
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 1.1e-10 71.6 35 88.6
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 1.1e-10 71.6 35 88.6
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 1.4e-10 71.2 35 85.7
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-10 70.9 35 88.6
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.9e-10 70.9 35 88.6
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 3.2e-10 70.1 35 88.6
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 4.2e-10 69.7 35 88.6
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 4.2e-10 69.7 35 88.6
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.1e-10 68.9 31 100.0
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 1.2e-09 68.2 53 67.9
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.6e-09 67.8 35 85.7
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 3.5e-09 66.6 35 80.0
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 4.6e-09 66.2 30 96.7
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 4.6e-09 66.2 37 81.1
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 4.6e-09 66.2 37 81.1
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 6.0e-09 65.9 31 90.3
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 1.0e-08 65.1 41 73.2
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 1.8e-08 64.3 32 84.4
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.3e-08 63.9 49 69.4
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 2.3e-08 63.9 49 69.4
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 2.3e-08 63.9 49 69.4
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.3e-08 63.9 49 67.3
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 2.3e-08 63.9 49 69.4
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 3.0e-08 63.5 49 65.3
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 3.0e-08 63.5 49 67.3
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 3.0e-08 63.5 59 55.9
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 3.9e-08 63.2 49 67.3
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 5.1e-08 62.8 30 90.0
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 5.1e-08 62.8 30 90.0
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 5.1e-08 62.8 30 90.0
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 6.7e-08 62.4 49 67.3
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 2.5e-07 60.5 49 63.3
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 4.3e-07 59.7 48 68.8
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 7.4e-07 58.9 29 89.7
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 1.6e-06 57.8 34 73.5
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 1.6e-06 57.8 33 75.8
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 4.8e-06 56.2 39 71.8
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.2e-06 55.5 36 69.4


User provided reference genes

Program Settings