Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 3.8e-125 451.8 281 100.0
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.1e-79 300.8 299 60.5
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 3.5e-78 295.8 336 64.9
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.7e-75 286.2 284 58.8
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.0e-73 280.0 322 54.0
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 2.0e-73 280.0 322 54.0
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 4.4e-73 278.9 335 62.7
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 4.8e-72 275.4 317 53.6
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 6.3e-72 275.0 301 55.5
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 1.4e-71 273.9 290 57.6
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 7.0e-71 271.6 309 52.4
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.2e-67 260.8 292 53.8
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 4.7e-67 258.8 299 52.8
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 4.7e-67 258.8 298 53.0
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 8.0e-67 258.1 301 51.8
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.4e-66 257.3 297 52.2
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 2.3e-66 256.5 297 51.9
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 5.2e-66 255.4 282 52.5
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 3.4e-65 252.7 290 52.8
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 3.4e-65 252.7 293 53.2
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 2.8e-64 249.6 286 52.1
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 3.7e-64 249.2 290 52.1
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.8e-63 246.9 291 53.3
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 7.0e-63 245.0 138 88.4
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 3.5e-62 242.7 301 51.8
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.0e-61 241.1 314 50.3
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.3e-61 240.0 294 51.4
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 2.9e-61 239.6 294 52.0
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 2.9e-61 239.6 226 59.7
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.9e-61 239.6 283 52.3
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 3.8e-61 239.2 281 53.0
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.8e-61 239.2 281 52.7
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 6.6e-61 238.4 309 48.9
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 1.1e-60 237.7 301 50.8
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.5e-60 237.3 283 52.3
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 9.5e-60 234.6 289 50.9
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 4.7e-59 232.3 287 51.2
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.2e-58 228.8 277 54.9
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 5.2e-58 228.8 301 48.8
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 8.9e-58 228.0 288 51.4
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 3.4e-57 226.1 292 50.7
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 4.4e-57 225.7 291 50.5
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 7.5e-57 224.9 291 49.5
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 9.8e-57 224.6 290 49.3
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 4.9e-56 222.2 305 48.2
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 8.3e-56 221.5 291 49.5
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.8e-55 220.3 295 49.5
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 4.1e-55 219.2 291 48.1
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 4.1e-55 219.2 282 51.1
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.2e-54 217.6 268 50.0
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.0e-54 216.9 282 50.0
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 2.7e-54 216.5 282 49.6
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.7e-54 216.5 282 49.6
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.6e-54 215.7 285 50.9
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 7.8e-54 214.9 278 52.5
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.8e-54 214.9 282 50.0
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.0e-53 214.5 295 47.5
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.0e-53 214.5 281 47.7
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.0e-53 214.5 282 50.0
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 1.3e-53 214.2 298 48.7
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.0e-53 213.0 284 47.9
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 8.6e-53 211.5 307 45.9
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.1e-52 211.1 287 49.1
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.5e-52 210.7 290 48.3
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 1.5e-52 210.7 301 46.5
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 4.3e-52 209.1 301 48.8
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 4.3e-52 209.1 285 49.1
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 9.5e-52 208.0 281 48.0
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 1.6e-51 207.2 298 47.7
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 2.1e-51 206.8 292 48.3
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 2.1e-51 206.8 302 47.0
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 3.6e-51 206.1 280 50.4
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 3.6e-51 206.1 200 58.5
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 6.2e-51 205.3 301 46.5
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 6.2e-51 205.3 289 49.5
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 8.0e-51 204.9 300 47.3
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 8.0e-51 204.9 300 47.3
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 8.0e-51 204.9 299 45.8
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 1.1e-50 204.5 288 46.5
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.1e-50 204.5 287 46.7
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.3e-50 203.4 293 46.1
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 3.1e-50 203.0 294 45.9
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.1e-50 203.0 299 47.2
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 8.9e-50 201.4 311 45.0
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 2.0e-49 200.3 317 45.4
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 9.8e-49 198.0 209 54.1
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 1.3e-48 197.6 311 44.1
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.7e-48 197.2 296 47.3
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.7e-48 197.2 298 46.6
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 1.7e-48 197.2 300 44.3
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 6.4e-48 195.3 274 49.6
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.4e-47 193.4 115 81.7
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 2.4e-47 193.4 295 47.1
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 3.2e-47 193.0 287 46.7
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 3.2e-47 193.0 287 46.7
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 3.2e-47 193.0 276 46.4
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 7.0e-47 191.8 298 44.3
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 7.0e-47 191.8 278 46.8
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 9.2e-47 191.4 118 77.1
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.6e-46 190.7 294 46.3
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.7e-46 189.9 113 81.4
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 3.5e-46 189.5 300 46.7
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 4.6e-46 189.1 205 53.2
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.0e-46 188.7 205 53.2
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.0e-45 188.0 118 78.0
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.7e-45 187.2 288 45.8
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 2.3e-45 186.8 285 46.0
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 3.0e-45 186.4 290 45.9
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 3.0e-45 186.4 294 44.2
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 3.9e-45 186.0 241 49.4
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 5.0e-45 185.7 295 46.1
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 5.0e-45 185.7 285 46.3
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 6.6e-45 185.3 285 44.9
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 8.6e-45 184.9 296 47.0
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.1e-44 184.5 240 49.6
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.5e-44 184.1 291 45.4
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.9e-44 183.7 298 45.0
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.9e-44 183.7 298 43.6
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.9e-44 183.7 333 39.9
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 2.5e-44 183.3 298 45.0
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 3.3e-44 183.0 298 43.0
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 5.6e-44 182.2 299 44.5
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 5.6e-44 182.2 287 44.3
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 7.3e-44 181.8 298 44.6
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 9.5e-44 181.4 259 48.6
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 3.6e-43 179.5 285 44.6
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-42 177.9 302 43.0
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.8e-42 177.2 286 44.1
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 3.1e-42 176.4 289 42.9
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.0e-42 176.0 258 46.5
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 6.8e-42 175.3 289 49.1
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 1.5e-41 174.1 246 46.7
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 5.8e-41 172.2 281 45.9
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.9e-40 169.9 112 75.0
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.1e-39 167.9 116 74.1
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.2e-38 164.5 257 42.8
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.5e-36 156.8 258 46.1
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 7.3e-36 155.2 285 41.1
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 8.1e-35 151.8 288 40.3
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 8.1e-35 151.8 137 59.1
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.2e-33 147.9 113 64.6
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 4.9e-32 142.5 191 51.3
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.4e-31 141.0 227 45.8
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.6e-30 137.5 239 41.0
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.7e-30 136.7 112 60.7
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.7e-30 136.7 112 60.7
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.5e-30 136.3 110 63.6
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.7e-29 134.0 110 62.7
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 2.3e-29 133.7 105 65.7
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 3.9e-29 132.9 235 42.1
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 3.2e-23 113.2 78 71.8
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 1.2e-22 111.3 130 45.4
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.6e-20 102.4 115 59.1
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 7.9e-14 82.0 117 45.3
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 9.6e-12 75.1 129 45.7
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.1e-10 71.6 55 60.0
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 2.4e-10 70.5 106 49.1
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 2.0e-09 67.4 114 41.2
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.6e-09 67.0 116 44.0
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 8.4e-08 62.0 42 83.3
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.1e-07 61.6 146 34.9
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.4e-07 60.5 49 59.2
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.6e-06 57.8 111 42.3


User provided reference genes

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