Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 1.2e-65 253.1 130 100.0
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 1.2e-65 253.1 130 100.0
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 2.4e-50 202.2 130 80.8
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 3.4e-28 128.6 121 57.0
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 7.5e-28 127.5 125 56.0
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 2.2e-27 125.9 129 56.6
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 3.7e-27 125.2 118 55.1
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 1.9e-26 122.9 130 55.4
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.6e-25 119.8 98 61.2
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.3e-24 115.9 139 52.5
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 3.0e-24 115.5 119 56.3
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 8.1e-22 107.5 125 50.4
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 6.8e-21 104.4 135 49.6
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 2.0e-20 102.8 131 50.4
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.6e-20 102.4 121 47.1
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.6e-20 102.4 121 47.1
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 3.8e-19 98.6 124 50.0
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 8.4e-19 97.4 121 51.2
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 1.4e-18 96.7 120 50.0
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 1.9e-18 96.3 133 48.1
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 2.4e-18 95.9 123 52.0
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 3.2e-18 95.5 128 44.5
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 9.2e-18 94.0 121 49.6
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 9.2e-18 94.0 135 46.7
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 1.2e-17 93.6 92 53.3
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 2.1e-17 92.8 123 47.2
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.7e-17 92.4 120 47.5
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 4.6e-17 91.7 120 47.5
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 4.6e-17 91.7 128 46.9
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 7.8e-17 90.9 88 53.4
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.0e-16 90.5 99 51.5
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.0e-16 90.5 115 47.8
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 1.3e-16 90.1 136 44.9
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.3e-16 90.1 120 45.8
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.3e-16 90.1 126 45.2
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 1.3e-16 90.1 126 45.2
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 1.7e-16 89.7 88 54.5
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 1.7e-16 89.7 126 46.0
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 3.0e-16 89.0 124 47.6
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 6.6e-16 87.8 130 46.2
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 8.7e-16 87.4 119 47.1
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 1.5e-15 86.7 119 47.1
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 1.9e-15 86.3 126 46.8
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 1.9e-15 86.3 116 44.8
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 2.5e-15 85.9 114 48.2
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 3.3e-15 85.5 122 46.7
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 5.6e-15 84.7 123 44.7
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 9.6e-15 84.0 119 47.1
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 1.3e-14 83.6 127 44.1
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.6e-14 83.2 122 39.3
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.6e-14 83.2 119 47.1
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 1.6e-14 83.2 119 47.1
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 1.6e-14 83.2 122 46.7
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.8e-14 82.4 128 45.3
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 3.6e-14 82.0 118 42.4
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 6.2e-14 81.3 100 47.0
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 6.2e-14 81.3 100 47.0
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 6.2e-14 81.3 110 48.2
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 1.1e-13 80.5 129 41.9
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 5.3e-13 78.2 116 44.8
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.5e-12 76.6 124 46.8
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 1.5e-12 76.6 136 44.1
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 1.5e-12 76.6 117 41.0
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 3.4e-12 75.5 93 47.3
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 3.4e-12 75.5 93 47.3
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 3.4e-12 75.5 121 43.8
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 4.4e-12 75.1 118 44.1
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 5.8e-12 74.7 88 44.3
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 7.6e-12 74.3 131 40.5
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 1.7e-11 73.2 113 44.2
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.2e-11 72.8 120 41.7
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 2.2e-11 72.8 134 40.3
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.9e-11 72.4 123 39.0
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.9e-11 72.4 114 37.7
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.9e-11 72.4 114 38.6
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 3.8e-11 72.0 87 47.1
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 3.8e-11 72.0 126 40.5
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 4.9e-11 71.6 119 42.9
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 4.9e-11 71.6 116 41.4
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 4.9e-11 71.6 119 39.5
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 4.9e-11 71.6 114 38.6
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 4.9e-11 71.6 121 43.0
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 4.9e-11 71.6 123 39.8
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 4.9e-11 71.6 117 42.7
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.4e-11 70.9 123 39.8
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 8.4e-11 70.9 120 39.2
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 1.1e-10 70.5 88 48.9
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.9e-10 69.7 125 40.0
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 1.9e-10 69.7 88 43.2
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.9e-10 69.7 116 36.2
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.4e-10 69.3 125 40.0
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 2.4e-10 69.3 122 41.8
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 2.4e-10 69.3 114 41.2
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 3.2e-10 68.9 113 41.6
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 5.4e-10 68.2 136 38.2
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 5.4e-10 68.2 127 39.4
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.4e-10 68.2 127 39.4
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.4e-10 68.2 127 39.4
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 5.4e-10 68.2 112 34.8
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.1e-10 67.8 125 39.2
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 9.3e-10 67.4 135 38.5
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 1.2e-09 67.0 120 39.2
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 1.6e-09 66.6 132 37.1
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 2.1e-09 66.2 119 39.5
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 2.7e-09 65.9 114 42.1
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 3.5e-09 65.5 86 44.2
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.6e-09 65.1 125 37.6
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 4.6e-09 65.1 119 40.3
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 7.8e-09 64.3 100 34.0
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 1.7e-08 63.2 130 39.2
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.7e-08 63.2 124 34.7
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 1.7e-08 63.2 117 35.0
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 2.3e-08 62.8 110 39.1
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 3.0e-08 62.4 87 40.2
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 3.0e-08 62.4 114 36.8
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.9e-08 62.0 122 37.7
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 6.6e-08 61.2 143 35.7
CiPaw.07G113900 Carya illinoinensis HOM05D003529 ORTHO05D004106 6.6e-08 61.2 133 34.6
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 6.6e-08 61.2 129 40.3
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 6.6e-08 61.2 86 39.5
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 6.6e-08 61.2 122 40.2
ECA236G3228 Erigeron canadensis HOM05D003529 ORTHO05D004106 8.7e-08 60.8 121 38.8
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 8.7e-08 60.8 100 38.0
Medtr7g082760 Medicago truncatula HOM05D004062 ORTHO05D004417 1.1e-07 60.5 108 37.0
MELO3C005337.2 Cucumis melo HOM05D004062 ORTHO05D004417 1.5e-07 60.1 132 37.1
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.9e-07 59.7 122 36.9
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 2.5e-07 59.3 123 38.2
Os05g0576600 Oryza sativa ssp. japonica HOM05D025274 ORTHO05D026015 3.3e-07 58.9 131 32.8
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 4.3e-07 58.5 96 39.6
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 5.6e-07 58.2 127 37.0
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 7.3e-07 57.8 136 36.0
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 7.3e-07 57.8 136 36.0
Eucgr.G02232 Eucalyptus grandis HOM05D004062 ORTHO05D004417 9.6e-07 57.4 133 34.6
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.3e-06 57.0 127 32.3
Glyma.19G214300 Glycine max HOM05D003529 ORTHO05D004106 1.3e-06 57.0 118 33.1
Zm00001eb296670 Zea mays HOM05D025274 ORTHO05D026015 1.3e-06 57.0 126 33.3
CiPaw.08G092200 Carya illinoinensis HOM05D003529 ORTHO05D004106 1.6e-06 56.6 113 36.3
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 1.6e-06 56.6 101 34.7
arahy.Tifrunner.gnm1.ann1.VI73GY Arachis hypogaea HOM05D003529 ORTHO05D004106 2.1e-06 56.2 125 29.6
ATR0706G120 Amborella trichopoda HOM05D003529 ORTHO05D004106 2.8e-06 55.8 120 37.5
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 3.6e-06 55.5 109 34.9
Migut.D00112 Erythranthe guttata HOM05D003529 ORTHO05D004106 3.6e-06 55.5 135 31.9
Manes.14G107900 Manihot esculenta HOM05D004062 ORTHO05D004417 4.8e-06 55.1 103 37.9
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 6.2e-06 54.7 135 32.6
MBI16_g07254_MAGBIO Magnolia biondii HOM05D014442 ORTHO05D004417 6.2e-06 54.7 78 41.0
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 8.1e-06 54.3 101 36.6


User provided reference genes

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