Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 4.1e-128 461.5 241 100.0
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 9.5e-93 344.0 221 81.9
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 7.1e-88 327.8 221 79.6
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 1.9e-85 319.7 223 76.7
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.2e-83 311.6 233 74.7
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 6.8e-83 311.2 223 74.4
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.3e-81 307.0 233 73.0
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 5.4e-80 301.6 225 73.3
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 2.1e-79 299.7 225 72.4
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 4.6e-79 298.5 233 73.0
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 8.6e-78 294.3 236 69.5
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 3.3e-77 292.4 224 70.5
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 7.3e-77 291.2 229 72.5
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.2e-76 288.1 224 70.1
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.1e-75 287.3 214 73.4
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.4e-75 286.2 219 72.6
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.4e-75 286.2 224 69.6
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 6.8e-75 284.6 228 68.0
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 2.0e-74 283.1 230 69.1
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 3.4e-74 282.3 224 72.3
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.4e-74 282.3 230 68.3
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 7.6e-74 281.2 253 65.2
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 9.9e-74 280.8 220 69.5
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 1.7e-73 280.0 226 65.5
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 3.8e-73 278.9 222 72.5
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 4.9e-73 278.5 227 65.6
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 8.4e-73 277.7 224 66.5
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.1e-72 277.3 225 68.0
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.1e-72 277.3 223 68.6
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.4e-72 276.9 220 70.9
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 2.4e-72 276.2 228 66.2
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 3.2e-72 275.8 220 69.5
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 3.2e-72 275.8 217 70.0
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 5.4e-72 275.0 225 68.9
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 5.4e-72 275.0 216 70.4
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 9.3e-72 274.2 225 71.1
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 9.3e-72 274.2 217 68.2
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.6e-71 273.5 226 65.5
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 2.1e-71 273.1 228 66.2
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.7e-71 272.7 220 70.9
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 2.7e-71 272.7 219 70.8
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.5e-71 272.3 228 65.8
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 7.8e-71 271.2 225 70.2
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 1.0e-70 270.8 220 69.1
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.0e-70 270.8 232 65.5
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.7e-70 270.0 228 65.4
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.0e-70 269.2 228 65.4
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 5.1e-70 268.5 225 65.3
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 5.1e-70 268.5 227 69.2
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 5.1e-70 268.5 226 64.2
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 1.9e-69 266.5 247 65.2
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.9e-69 266.5 231 67.1
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 3.3e-69 265.8 223 68.2
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 3.3e-69 265.8 223 68.2
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.6e-68 263.5 226 63.3
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.1e-68 263.1 226 63.3
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 2.1e-68 263.1 235 63.4
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 2.8e-68 262.7 208 69.7
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.6e-68 262.3 258 59.7
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 3.6e-68 262.3 232 66.8
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 4.8e-68 261.9 226 62.8
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 4.8e-68 261.9 218 68.3
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.4e-67 260.4 230 64.3
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.4e-67 260.4 232 65.9
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 4.0e-67 258.8 223 66.8
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 4.0e-67 258.8 223 65.5
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 6.9e-67 258.1 224 65.2
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.2e-66 257.3 220 66.8
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 2.0e-66 256.5 227 64.3
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 4.4e-66 255.4 228 66.7
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 5.8e-66 255.0 229 63.8
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 1.3e-65 253.8 221 65.6
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.3e-65 253.8 225 63.6
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 1.7e-65 253.4 224 65.6
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.4e-64 250.4 240 62.5
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 2.4e-64 249.6 226 63.7
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 1.2e-63 247.3 226 64.6
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.7e-63 246.1 217 66.4
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 2.7e-63 246.1 244 62.3
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 3.9e-62 242.3 245 60.4
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 5.1e-62 241.9 225 63.1
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 6.6e-62 241.5 225 61.8
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 1.5e-61 240.4 228 64.9
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 2.5e-61 239.6 228 65.4
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 5.6e-61 238.4 272 54.4
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 9.6e-61 237.7 225 59.1
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.6e-60 235.7 227 62.6
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 3.6e-60 235.7 227 62.6
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.6e-60 235.7 223 61.0
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 6.2e-60 235.0 224 62.5
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.1e-59 234.2 225 60.9
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.8e-59 233.4 224 62.9
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.4e-59 233.0 220 62.7
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 4.0e-59 232.3 227 61.2
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.2e-58 230.7 240 60.4
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.5e-58 230.3 213 60.6
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 2.2e-57 226.5 215 63.3
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 1.1e-56 224.2 221 61.5
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 1.9e-56 223.4 241 57.7
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 7.1e-56 221.5 183 66.7
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 7.1e-56 221.5 217 65.9
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 1.6e-55 220.3 221 62.0
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 6.0e-55 218.4 234 59.0
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 1.8e-54 216.9 244 56.1
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 2.3e-54 216.5 244 56.1
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 3.9e-54 215.7 236 55.1
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 5.1e-54 215.3 244 56.6
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 5.1e-54 215.3 244 56.6
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 6.7e-54 214.9 237 58.6
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 6.7e-54 214.9 237 58.6
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 8.7e-54 214.5 244 55.7
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 2.5e-53 213.0 240 56.2
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 4.3e-53 212.2 241 56.8
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 4.3e-53 212.2 251 53.8
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 9.6e-53 211.1 246 57.3
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.6e-52 210.3 191 64.4
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 2.1e-52 209.9 247 55.9
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 4.8e-52 208.8 242 56.2
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 4.8e-52 208.8 244 54.9
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 8.1e-52 208.0 244 54.9
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 8.1e-52 208.0 245 54.7
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 1.4e-51 207.2 233 57.5
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.8e-51 206.8 246 58.5
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 1.8e-51 206.8 233 54.9
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 3.1e-51 206.1 251 53.4
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 3.1e-51 206.1 226 59.3
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.5e-50 203.8 252 52.8
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.5e-50 203.8 226 56.6
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 2.2e-49 199.9 244 53.3
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 2.9e-49 199.5 242 53.7
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 2.9e-49 199.5 242 53.7
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.1e-48 197.6 264 49.2
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.4e-48 197.2 245 53.9
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 5.5e-48 195.3 245 53.1
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 2.7e-47 193.0 225 55.1
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 6.7e-46 188.3 259 50.2
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 8.7e-46 188.0 109 88.1
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 5.7e-45 185.3 228 53.9
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 7.4e-45 184.9 222 52.7
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 3.7e-44 182.6 219 55.7
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.4e-43 180.6 222 54.1
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 2.9e-41 172.9 225 51.6
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 1.8e-38 163.7 207 49.8
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 4.3e-37 159.1 219 50.7
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 1.3e-36 157.5 166 57.8
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 1.6e-36 157.1 235 48.1
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 7.7e-34 148.3 185 50.8
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 2.9e-33 146.4 112 69.6
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 6.5e-33 145.2 166 54.8
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 1.4e-32 144.1 207 46.4
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 1.9e-32 143.7 207 46.4
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.1e-31 140.2 204 46.6
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 6.1e-31 138.7 204 46.6
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 7.9e-31 138.3 207 45.4
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 1.0e-30 137.9 207 45.4
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 1.5e-29 134.0 198 44.9
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 5.3e-27 125.6 202 45.0
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 2.1e-23 113.6 157 46.5
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 6.1e-23 112.1 159 45.9
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 1.4e-19 100.9 64 85.9
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 2.6e-18 96.7 84 64.3
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 4.5e-18 95.9 172 43.0


User provided reference genes

Program Settings