Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 7.5e-55 216.9 103 100.0
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 2.4e-16 89.0 66 60.6
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 9.0e-16 87.0 66 59.1
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 2.0e-15 85.9 62 62.9
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 2.2e-14 82.4 67 59.7
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 2.9e-14 82.0 66 59.1
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 3.8e-14 81.6 62 56.5
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 3.8e-14 81.6 66 62.1
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 4.9e-14 81.3 73 52.1
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 4.9e-14 81.3 67 55.2
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 1.1e-13 80.1 69 55.1
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 5.4e-13 77.8 66 50.0
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 5.4e-13 77.8 68 54.4
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 5.4e-13 77.8 67 49.3
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 1.2e-12 76.6 66 53.0
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 1.2e-12 76.6 65 58.5
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 1.6e-12 76.3 62 56.5
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.6e-12 76.3 66 53.0
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 1.6e-12 76.3 63 52.4
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 2.1e-12 75.9 67 52.2
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 2.1e-12 75.9 54 63.0
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 2.7e-12 75.5 66 51.5
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 2.7e-12 75.5 66 51.5
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 3.5e-12 75.1 66 51.5
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 3.5e-12 75.1 66 51.5
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 3.5e-12 75.1 66 56.1
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 3.5e-12 75.1 64 50.0
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 4.6e-12 74.7 66 50.0
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 4.6e-12 74.7 62 56.5
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 4.6e-12 74.7 70 50.0
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 6.0e-12 74.3 63 52.4
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 6.0e-12 74.3 66 51.5
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 7.8e-12 73.9 66 51.5
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 7.8e-12 73.9 64 51.6
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 7.8e-12 73.9 55 60.0
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 1.3e-11 73.2 66 50.0
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 1.3e-11 73.2 66 50.0
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 1.3e-11 73.2 66 48.5
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 1.3e-11 73.2 64 54.7
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 1.7e-11 72.8 60 50.0
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 1.7e-11 72.8 64 53.1
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 3.0e-11 72.0 64 50.0
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 3.0e-11 72.0 66 53.0
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 3.0e-11 72.0 66 50.0
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 3.9e-11 71.6 50 60.0
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 3.9e-11 71.6 75 49.3
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 3.9e-11 71.6 52 55.8
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 3.9e-11 71.6 66 48.5
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 8.7e-11 70.5 67 47.8
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 1.1e-10 70.1 66 50.0
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 1.1e-10 70.1 63 54.0
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 1.5e-10 69.7 66 53.0
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 1.5e-10 69.7 60 48.3
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.5e-10 69.7 50 58.0
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 1.9e-10 69.3 65 52.3
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 2.5e-10 68.9 66 45.5
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.3e-10 68.2 66 50.0
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.3e-10 68.2 66 48.5
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 4.3e-10 68.2 50 56.0
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 5.6e-10 67.8 62 50.0
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 7.3e-10 67.4 68 47.1
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 7.3e-10 67.4 66 48.5
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 9.6e-10 67.0 60 46.7
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 1.3e-09 66.6 59 52.5
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 1.3e-09 66.6 64 48.4
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 1.3e-09 66.6 64 48.4
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.6e-09 66.2 59 47.5
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 3.1e-08 62.0 70 44.3
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 6.9e-08 60.8 72 43.1
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 9.0e-08 60.5 56 51.8
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.0e-07 59.3 53 52.8
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 2.0e-07 59.3 53 52.8
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 2.0e-07 59.3 49 51.0
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 3.4e-07 58.5 51 51.0
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 3.4e-07 58.5 69 40.6
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 4.5e-07 58.2 46 52.2
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 5.8e-07 57.8 62 45.2
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 5.8e-07 57.8 51 51.0
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 9.9e-07 57.0 40 55.0


User provided reference genes

Program Settings