Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 8.1e-109 397.1 205 100.0
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 1.3e-85 320.1 230 73.0
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 4.0e-84 315.1 225 72.4
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.5e-83 313.2 224 73.2
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 7.6e-83 310.8 227 73.1
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 3.8e-82 308.5 232 69.0
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 2.1e-80 302.8 231 69.3
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 1.9e-78 296.2 223 70.0
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 3.3e-78 295.4 223 70.0
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 2.1e-77 292.7 224 68.8
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 2.8e-77 292.4 228 69.3
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.1e-76 290.4 188 77.7
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.1e-76 290.4 188 77.7
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 1.4e-76 290.0 228 68.0
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 1.4e-76 290.0 229 66.4
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 1.8e-76 289.7 227 67.0
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 2.4e-76 289.3 224 67.9
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 4.0e-76 288.5 230 66.5
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 6.9e-76 287.7 231 64.9
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 1.5e-75 286.6 228 65.4
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 2.0e-75 286.2 227 66.5
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.0e-75 286.2 230 64.3
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.4e-75 285.4 227 65.6
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 7.6e-75 284.3 226 65.0
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.3e-74 283.5 227 65.2
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.3e-74 283.5 227 65.2
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.3e-74 283.5 221 68.8
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 1.3e-74 283.5 221 68.8
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 1.3e-74 283.5 221 66.5
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 1.7e-74 283.1 221 66.1
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 2.2e-74 282.7 220 65.5
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 2.9e-74 282.3 219 67.1
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 3.8e-74 282.0 230 63.0
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 3.8e-74 282.0 226 64.6
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 4.9e-74 281.6 225 65.8
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 4.9e-74 281.6 223 67.3
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 4.9e-74 281.6 185 77.8
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 4.9e-74 281.6 223 65.9
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 6.4e-74 281.2 227 64.3
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 6.4e-74 281.2 227 63.9
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 8.4e-74 280.8 227 68.3
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 1.1e-73 280.4 221 67.9
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.1e-73 280.4 228 63.6
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.1e-73 280.4 221 68.3
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 1.9e-73 279.6 223 64.6
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 1.9e-73 279.6 228 63.6
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 3.2e-73 278.9 221 66.1
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 4.2e-73 278.5 178 77.0
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 5.5e-73 278.1 224 64.7
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 5.5e-73 278.1 230 63.0
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 7.1e-73 277.7 225 66.2
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 7.1e-73 277.7 222 63.1
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 7.1e-73 277.7 284 56.0
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 7.1e-73 277.7 229 65.9
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 9.3e-73 277.3 220 65.5
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 9.3e-73 277.3 225 64.4
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.6e-72 276.6 231 63.2
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.1e-72 276.2 226 65.0
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 2.1e-72 276.2 224 66.1
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 2.7e-72 275.8 228 65.8
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 6.0e-72 274.6 223 63.7
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 7.9e-72 274.2 217 66.4
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 1.0e-71 273.9 225 64.9
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 1.3e-71 273.5 225 63.1
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 3.9e-71 271.9 175 79.4
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 6.7e-71 271.2 229 64.2
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 8.7e-71 270.8 226 61.5
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.1e-70 270.4 227 64.8
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 1.1e-70 270.4 229 63.3
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 1.5e-70 270.0 219 64.4
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 1.5e-70 270.0 179 74.3
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.5e-70 270.0 222 61.7
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 3.3e-70 268.9 222 63.1
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 5.6e-70 268.1 225 64.0
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.1e-69 266.2 227 64.3
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.4e-68 263.5 182 69.2
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 1.8e-68 263.1 211 65.4
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.1e-68 262.3 226 62.4
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 4.0e-68 261.9 227 58.6
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 6.9e-68 261.2 224 59.4
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 1.2e-67 260.4 222 61.7
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 2.6e-67 259.2 227 58.6
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 2.6e-67 259.2 225 60.9
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.9e-66 255.8 227 57.3
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 3.8e-66 255.4 154 81.8
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 3.8e-66 255.4 255 56.9
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.9e-65 253.1 183 74.3
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 1.9e-65 253.1 226 61.1
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 4.2e-65 251.9 182 69.8
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 7.1e-65 251.1 182 66.5
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 9.3e-65 250.8 182 64.3
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 9.3e-65 250.8 228 58.8
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.6e-64 250.0 223 56.5
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.5e-64 248.8 253 56.1
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 4.6e-64 248.4 226 56.2
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 4.6e-64 248.4 226 56.2
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 3.0e-63 245.7 222 55.0
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 3.9e-63 245.4 226 55.3
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 3.9e-63 245.4 226 55.3
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 6.7e-63 244.6 221 57.0
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 6.7e-63 244.6 221 59.3
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 1.1e-62 243.8 226 55.8
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 3.3e-62 242.3 222 54.5
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 3.3e-62 242.3 185 67.6
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 3.3e-62 242.3 185 67.6
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.1e-61 239.6 182 64.3
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.8e-61 239.2 221 56.1
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 4.8e-61 238.4 148 79.1
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 8.2e-61 237.7 222 54.1
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 8.2e-61 237.7 195 63.1
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 1.4e-60 236.9 223 54.3
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.4e-60 236.9 223 54.3
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 1.4e-60 236.9 223 54.3
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 4.1e-60 235.3 223 53.8
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 4.1e-60 235.3 223 53.8
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 4.1e-60 235.3 223 53.8
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 6.9e-60 234.6 220 55.0
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 6.9e-60 234.6 192 60.9
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 1.2e-59 233.8 223 53.4
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.0e-59 233.0 232 56.5
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 4.5e-59 231.9 181 63.5
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 3.8e-58 228.8 143 77.6
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 2.1e-56 223.0 174 62.1
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.3e-55 219.5 147 74.1
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.1e-54 217.2 220 55.5
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.3e-53 213.8 228 50.4
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.3e-53 213.8 228 50.4
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 6.9e-52 208.0 182 56.0
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 9.1e-52 207.6 148 63.5
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.3e-50 203.8 232 51.3
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 7.2e-49 198.0 194 51.0
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 4.6e-48 195.3 160 61.2
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 7.9e-48 194.5 157 63.7
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 4.4e-46 188.7 165 57.0
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 5.3e-44 181.8 239 47.7
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 9.1e-44 181.0 153 52.9
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 1.0e-42 177.6 133 65.4
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 1.0e-42 177.6 181 48.1
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 4.2e-41 172.2 215 44.7
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 4.2e-41 172.2 176 47.7
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 9.4e-41 171.0 180 48.3
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.2e-40 170.6 227 47.6
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 1.8e-39 166.8 116 70.7
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.8e-34 149.1 227 43.6
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.9e-33 146.7 154 46.8
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.9e-33 146.7 123 60.2
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 7.5e-30 134.8 91 74.7
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 2.0e-27 126.7 87 72.4
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 5.9e-27 125.2 120 53.3
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 6.5e-26 121.7 120 53.3
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 5.2e-23 112.1 155 45.2
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 5.2e-23 112.1 155 45.2
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 2.7e-19 99.8 110 44.5
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.0e-18 97.8 66 77.3
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 8.8e-15 84.7 155 31.6
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 2.0e-14 83.6 71 54.9
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 4.4e-14 82.4 48 77.1
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 1.0e-07 61.2 38 73.7
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 7.5e-06 55.1 73 46.6


User provided reference genes

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