Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu030316.1 Olea europaea HOM05D000065 ORTHO05D003050 5.8e-33 143.7 74 100.0
Oeu021611.1 Olea europaea HOM05D000065 ORTHO05D003050 1.3e-21 105.9 80 71.2
MD00G1116600 Malus domestica HOM05D000065 ORTHO05D003050 2.1e-14 82.0 68 58.8
TWI74G1414 Tripterygium wilfordii HOM05D000065 ORTHO05D003050 1.3e-13 79.3 77 57.1
AL7G46510 Arabidopsis lyrata HOM05D000065 ORTHO05D003050 1.8e-13 79.0 77 55.8
AUR62038705 Chenopodium quinoa HOM05D000065 ORTHO05D003050 1.8e-13 79.0 69 62.3
Thhalv10027814m.g Eutrema salsugineum HOM05D000065 ORTHO05D003050 2.3e-13 78.6 77 57.1
QL02p058272 Quercus lobata HOM05D000065 ORTHO05D003050 2.3e-13 78.6 79 57.0
QL93p0100_0677 Quercus lobata HOM05D000065 ORTHO05D003050 2.3e-13 78.6 79 57.0
Nitab4.5_0010112g0020 Nicotiana tabacum HOM05D000065 ORTHO05D003050 3.0e-13 78.2 69 62.3
Potri.017G130100 Populus trichocarpa HOM05D000065 ORTHO05D003050 3.0e-13 78.2 68 64.7
A04p10870 Brassica napus HOM05D000065 ORTHO05D003050 3.9e-13 77.8 77 54.5
C04p44620 Brassica napus HOM05D000065 ORTHO05D003050 3.9e-13 77.8 77 54.5
BraA04t16753Z Brassica rapa HOM05D000065 ORTHO05D003050 3.9e-13 77.8 77 54.5
Sabra04G0057600 Salix brachista HOM05D000065 ORTHO05D003050 3.9e-13 77.8 68 66.2
Prupe.3G016500 Prunus persica HOM05D000065 ORTHO05D003050 5.1e-13 77.4 80 58.8
Sopen11g005870 Solanum pennellii HOM05D000065 ORTHO05D003050 5.1e-13 77.4 79 55.7
MSTRG.2617 Avicennia marina HOM05D000065 ORTHO05D003050 6.7e-13 77.0 69 62.3
AT5G37690 Arabidopsis thaliana HOM05D000065 ORTHO05D003050 8.7e-13 76.6 77 54.5
Peaxi162Scf00305g00517 Petunia axillaris HOM05D000065 ORTHO05D003050 8.7e-13 76.6 68 63.2
Peaxi162Scf65753g00005 Petunia axillaris HOM05D000065 ORTHO05D003050 8.7e-13 76.6 68 63.2
Peaxi162Scf65753g00006 Petunia axillaris HOM05D000065 ORTHO05D003050 8.7e-13 76.6 68 63.2
Sp7g04360 Schrenkiella parvula HOM05D000065 ORTHO05D003050 8.7e-13 76.6 77 54.5
Ah.12g055340 Amaranthus hybridus HOM05D000065 ORTHO05D003050 1.1e-12 76.3 77 54.5
BcaC02g09605 Brassica carinata HOM05D000065 ORTHO05D003050 1.1e-12 76.3 77 53.2
BolC4t26035H Brassica oleracea HOM05D000065 ORTHO05D003050 1.1e-12 76.3 77 53.2
Cc07_g13420 Coffea canephora HOM05D000065 ORTHO05D003050 1.1e-12 76.3 75 57.3
Haze_14266 Corylus avellana HOM05D000065 ORTHO05D003050 1.1e-12 76.3 66 65.2
Sabra17G0108300 Salix brachista HOM05D000065 ORTHO05D003050 1.1e-12 76.3 80 57.5
Solyc11g011110.3 Solanum lycopersicum HOM05D000065 ORTHO05D003050 1.1e-12 76.3 79 54.4
Dinv28201 Davidia involucrata HOM05D000065 ORTHO05D003050 1.5e-12 75.9 71 60.6
MD09G1274700 Malus domestica HOM05D000065 ORTHO05D003050 1.5e-12 75.9 72 59.7
Potri.004G086700 Populus trichocarpa HOM05D000065 ORTHO05D003050 1.5e-12 75.9 68 64.7
SGA_v2.0_scaffold2G00940 Striga asiatica HOM05D000065 ORTHO05D003050 1.5e-12 75.9 72 58.3
AUR62018215 Chenopodium quinoa HOM05D000065 ORTHO05D003050 1.9e-12 75.5 86 53.5
GSVIVG01030799001 Vitis vinifera HOM05D000065 ORTHO05D003050 1.9e-12 75.5 66 62.1
CANSAT78G1582 Cannabis sativa HOM05D000065 ORTHO05D003050 2.5e-12 75.1 67 62.7
CiPaw.03G072200 Carya illinoinensis HOM05D000065 ORTHO05D003050 2.5e-12 75.1 65 60.0
CSS0042613 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D003050 3.3e-12 74.7 56 67.9
Eucgr.F02859 Eucalyptus grandis HOM05D000065 ORTHO05D003050 3.3e-12 74.7 70 61.4
Nn4g24289 Nelumbo nucifera HOM05D000065 ORTHO05D003050 3.3e-12 74.7 68 61.8
Rhsim10G0177600 Rhododendron simsii HOM05D000065 ORTHO05D003050 3.3e-12 74.7 72 61.1
THA.LOC104805619 Tarenaya hassleriana HOM05D000065 ORTHO05D003050 3.3e-12 74.7 71 53.5
Lsat_1_v5_gn_2_68981 Lactuca sativa HOM05D000065 ORTHO05D003050 4.3e-12 74.3 77 55.8
arahy.Tifrunner.gnm1.ann1.WA7111 Arachis hypogaea HOM05D000065 ORTHO05D003050 5.6e-12 73.9 80 51.2
arahy.Tifrunner.gnm1.ann1.WNS2H5 Arachis hypogaea HOM05D000065 ORTHO05D003050 5.6e-12 73.9 80 51.2
PGR004G2367 Punica granatum HOM05D000065 ORTHO05D003050 5.6e-12 73.9 72 56.9
Carub.0007s3286 Capsella rubella HOM05D000065 ORTHO05D003050 7.4e-12 73.6 78 55.1
Cpa.g.sc1111.3 Carica papaya HOM05D000065 ORTHO05D003050 7.4e-12 73.6 68 57.4
HanXRQChr07g0189091 Helianthus annuus HOM05D000065 ORTHO05D003050 7.4e-12 73.6 61 65.6
vmacro07697 Vaccinium macrocarpon HOM05D000065 ORTHO05D003050 7.4e-12 73.6 80 53.8
Aa31LG9G17430 Aethionema arabicum HOM05D000065 ORTHO05D003050 9.6e-12 73.2 69 55.1
Nitab4.5_0000201g0220 Nicotiana tabacum HOM05D000065 ORTHO05D003050 9.6e-12 73.2 70 58.6
RcHm_v2.0_Chr3g0490271 Rosa chinensis HOM05D000065 ORTHO05D003050 9.6e-12 73.2 69 56.5
Sc14g0006550 Simmondsia chinensis HOM05D000065 ORTHO05D003050 9.6e-12 73.2 56 66.1
PGSC0003DMG400015683 Solanum tuberosum HOM05D000065 ORTHO05D003050 9.6e-12 73.2 76 53.9
ATR0753G167 Amborella trichopoda HOM05D000065 ORTHO05D003050 1.3e-11 72.8 64 59.4
BcaB06g27121 Brassica carinata HOM05D000065 ORTHO05D003050 1.3e-11 72.8 74 58.1
Cfa007808 Carpinus fangiana HOM05D000065 ORTHO05D003050 1.3e-11 72.8 66 60.6
Actinidia06493 Actinidia chinensis HOM05D000065 ORTHO05D003050 1.6e-11 72.4 77 55.8
CAN.G222.30 Capsicum annuum HOM05D000065 ORTHO05D003050 2.1e-11 72.0 79 50.6
DCAR_011654 Daucus carota HOM05D000065 ORTHO05D003050 2.1e-11 72.0 80 51.2
FAN26G1507 Fragaria x ananassa HOM05D000065 ORTHO05D003050 2.1e-11 72.0 69 55.1
Manes.02G077100 Manihot esculenta HOM05D000065 ORTHO05D003050 2.1e-11 72.0 76 56.6
FvH4_1g30370 Fragaria vesca HOM05D000065 ORTHO05D003050 2.8e-11 71.6 69 53.6
TPR.G8271 Trifolium pratense HOM05D000065 ORTHO05D003050 2.8e-11 71.6 56 64.3
EL10Ac2g03173 Beta vulgaris HOM05D000065 ORTHO05D003050 3.7e-11 71.2 69 55.1
Lalb_Chr10g0104351 Lupinus albus HOM05D000065 ORTHO05D003050 3.7e-11 71.2 74 55.4
FAN19G1564 Fragaria x ananassa HOM05D000065 ORTHO05D003050 4.8e-11 70.9 69 53.6
LjContig00141g0007111 Lotus japonicus HOM05D000065 ORTHO05D003050 4.8e-11 70.9 73 54.8
Medtr5g078210 Medicago truncatula HOM05D000065 ORTHO05D003050 6.2e-11 70.5 71 53.5
CARHR215140 Cardamine hirsuta HOM05D000065 ORTHO05D003050 8.1e-11 70.1 77 51.9
Glyma.02G244900 Glycine max HOM05D000065 ORTHO05D003050 8.1e-11 70.1 73 54.8
Lj4C263G6 Lonicera japonica HOM05D000065 ORTHO05D003050 8.1e-11 70.1 71 56.3
TAR622G0390 Trochodendron aralioides HOM05D000065 ORTHO05D003050 8.1e-11 70.1 80 50.0
Aqoxy3G00562 Aquilegia oxysepala HOM05D000065 ORTHO05D003050 1.1e-10 69.7 68 54.4
ECA238G4052 Erigeron canadensis HOM05D000065 ORTHO05D003050 1.1e-10 69.7 63 61.9
MBI13_g01846_MAGBIO Magnolia biondii HOM05D000065 ORTHO05D003050 1.1e-10 69.7 76 51.3
Psat2g048200 Pisum sativum HOM05D000065 ORTHO05D003050 1.1e-10 69.7 73 54.8
Atru.chr1.1929 Acer truncatum HOM05D000065 ORTHO05D003050 1.4e-10 69.3 54 64.8
SalBow3G2173 Salvia bowleyana HOM05D000065 ORTHO05D003050 1.8e-10 68.9 75 50.7
FAN23G3137 Fragaria x ananassa HOM05D000065 ORTHO05D003050 2.4e-10 68.6 69 50.7
FAN28G0671 Fragaria x ananassa HOM05D000065 ORTHO05D003050 4.0e-10 67.8 64 54.7
Glyma.14G214100 Glycine max HOM05D000065 ORTHO05D003050 5.3e-10 67.4 73 52.1
Gohir.A08G052600 Gossypium hirsutum HOM05D000065 ORTHO05D003050 5.3e-10 67.4 79 49.4
Ciclev10013564m.g Citrus clementina HOM05D000065 ORTHO05D003050 9.0e-10 66.6 74 54.1
COL.COLO4_05990 Corchorus olitorius HOM05D000065 ORTHO05D003050 1.2e-09 66.2 75 50.7
Gohir.D08G062200 Gossypium hirsutum HOM05D000065 ORTHO05D003050 1.2e-09 66.2 73 52.1
Gorai.004G064300 Gossypium raimondii HOM05D000065 ORTHO05D003050 1.2e-09 66.2 73 52.1
Thecc.04G114300 Theobroma cacao HOM05D000065 ORTHO05D003050 1.5e-09 65.9 72 54.2
Phvul.008G236800 Phaseolus vulgaris HOM05D000065 ORTHO05D003050 2.0e-09 65.5 73 50.7
HanXRQChr14g0444661 Helianthus annuus HOM05D000065 ORTHO05D003050 2.6e-09 65.1 69 55.1
SEGI_11492 Sequoiadendron giganteum HOM05D000065 ORTHO05D003050 6.5e-08 60.5 75 48.0
VMungo0647G1750 Vigna mungo HOM05D000065 ORTHO05D003050 1.1e-07 59.7 77 49.4
Zm00001eb280670 Zea mays HOM05D000065 ORTHO05D003050 2.5e-07 58.5 80 42.5
Zm00001eb379820 Zea mays HOM05D000065 ORTHO05D003050 3.2e-07 58.2 55 54.5
SEGI_00191 Sequoiadendron giganteum HOM05D000065 ORTHO05D003050 5.5e-07 57.4 52 53.8
Sc12g0006420 Simmondsia chinensis HOM05D000065 ORTHO05D003050 7.1e-07 57.0 54 53.7
Gohir.A09G242600 Gossypium hirsutum HOM05D000065 ORTHO05D003050 9.3e-07 56.6 62 48.4
Gorai.006G267100 Gossypium raimondii HOM05D000065 ORTHO05D003050 9.3e-07 56.6 62 48.4
Os06g0257600 Oryza sativa ssp. japonica HOM05D000065 ORTHO05D003050 9.3e-07 56.6 53 52.8
Os02g0732800 Oryza sativa ssp. japonica HOM05D000065 ORTHO05D003050 1.2e-06 56.2 51 54.9
Sp5g29640 Schrenkiella parvula HOM05D000065 ORTHO05D003050 1.2e-06 56.2 75 48.0
ATR0564G507 Amborella trichopoda HOM05D000065 ORTHO05D003050 2.1e-06 55.5 58 50.0
Aqoxy3G03404 Aquilegia oxysepala HOM05D000065 ORTHO05D003050 2.1e-06 55.5 78 42.3
AT1G74460 Arabidopsis thaliana HOM05D000065 ORTHO05D003050 2.1e-06 55.5 75 45.3
Duzib084G0911 Durio zibethinus HOM05D000065 ORTHO05D003050 2.1e-06 55.5 78 42.3
Duzib205G1925 Durio zibethinus HOM05D000065 ORTHO05D003050 2.1e-06 55.5 78 41.0
ATR0564G503 Amborella trichopoda HOM05D000065 ORTHO05D003050 2.7e-06 55.1 55 49.1
A07p29400 Brassica napus HOM05D000065 ORTHO05D003050 2.7e-06 55.1 75 46.7
BolC6t38442H Brassica oleracea HOM05D000065 ORTHO05D003050 2.7e-06 55.1 75 46.7
BraA07t30577Z Brassica rapa HOM05D000065 ORTHO05D003050 2.7e-06 55.1 75 46.7
AUR62007062 Chenopodium quinoa HOM05D000065 ORTHO05D010113 2.7e-06 55.1 56 55.4
Manes.14G078800 Manihot esculenta HOM05D000065 ORTHO05D003050 2.7e-06 55.1 54 51.9
RcHm_v2.0_Chr7g0187331 Rosa chinensis HOM05D000065 ORTHO05D010113 2.7e-06 55.1 75 45.3
Zm00001eb190200 Zea mays HOM05D000065 ORTHO05D003050 2.7e-06 55.1 98 37.8
AL2G34340 Arabidopsis lyrata HOM05D000065 ORTHO05D003050 3.5e-06 54.7 75 44.0
CSS0004720 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D003050 3.5e-06 54.7 54 51.9
COL.COLO4_10806 Corchorus olitorius HOM05D000065 ORTHO05D010113 3.5e-06 54.7 75 49.3
Gohir.A12G240600 Gossypium hirsutum HOM05D000065 ORTHO05D010113 3.5e-06 54.7 75 45.3
Gohir.D12G241900 Gossypium hirsutum HOM05D000065 ORTHO05D010113 3.5e-06 54.7 75 45.3
Gorai.008G259200 Gossypium raimondii HOM05D000065 ORTHO05D010113 3.5e-06 54.7 75 45.3
Rhsim08G0106500 Rhododendron simsii HOM05D000065 ORTHO05D001606 3.5e-06 54.7 53 54.7
A07p21000 Brassica napus HOM05D000065 ORTHO05D010113 4.6e-06 54.3 56 53.6
C06p33280 Brassica napus HOM05D000065 ORTHO05D003050 4.6e-06 54.3 75 46.7
BraA07t29786Z Brassica rapa HOM05D000065 ORTHO05D010113 4.6e-06 54.3 56 53.6
Cfa018935 Carpinus fangiana HOM05D000065 ORTHO05D003050 4.6e-06 54.3 54 51.9
Haze_07319 Corylus avellana HOM05D000065 ORTHO05D003050 4.6e-06 54.3 54 51.9
Thhalv10018743m.g Eutrema salsugineum HOM05D000065 ORTHO05D003050 4.6e-06 54.3 76 46.1
SHI24197 Sapria himalayana HOM05D000065 ORTHO05D003050 4.6e-06 54.3 53 52.8
HPP92_013046 Vanilla planifolia HOM05D000065 ORTHO05D003050 4.6e-06 54.3 55 50.9
MSTRG.3407 Avicennia marina HOM05D000065 ORTHO05D001606 6.0e-06 53.9 53 54.7
BcaC03g15505 Brassica carinata HOM05D000065 ORTHO05D003050 6.0e-06 53.9 71 45.1
A02p19360 Brassica napus HOM05D000065 ORTHO05D003050 6.0e-06 53.9 71 45.1
C02p31870 Brassica napus HOM05D000065 ORTHO05D003050 6.0e-06 53.9 71 45.1
BolC2t09221H Brassica oleracea HOM05D000065 ORTHO05D003050 6.0e-06 53.9 71 45.1
BraA02t06975Z Brassica rapa HOM05D000065 ORTHO05D003050 6.0e-06 53.9 71 45.1
Cpa.g.sc423.3 Carica papaya HOM05D000065 ORTHO05D003050 6.0e-06 53.9 71 42.3
MELO3C020928.2 Cucumis melo HOM05D000065 ORTHO05D001606 6.0e-06 53.9 53 54.7
CsaV3_2G017250 Cucumis sativus L. HOM05D000065 ORTHO05D001606 6.0e-06 53.9 53 54.7
Eucgr.I01017 Eucalyptus grandis HOM05D000065 ORTHO05D001606 6.0e-06 53.9 53 54.7
Rhsim07G0077400 Rhododendron simsii HOM05D000065 ORTHO05D010113 6.0e-06 53.9 79 44.3
TAR622G1223 Trochodendron aralioides HOM05D000065 ORTHO05D003050 6.0e-06 53.9 55 49.1
Ah.11g048360 Amaranthus hybridus HOM05D000065 ORTHO05D003050 7.9e-06 53.5 72 41.7
EL10Ac5g11027 Beta vulgaris HOM05D000065 ORTHO05D003050 7.9e-06 53.5 78 38.5
EL10Ac5g12417 Beta vulgaris HOM05D000065 ORTHO05D010113 7.9e-06 53.5 56 53.6
COL.COLO4_08861 Corchorus olitorius HOM05D000065 ORTHO05D003050 7.9e-06 53.5 77 40.3
Eucgr.B00513 Eucalyptus grandis HOM05D000065 ORTHO05D003050 7.9e-06 53.5 78 41.0
MD02G1161000 Malus domestica HOM05D000065 ORTHO05D001606 7.9e-06 53.5 53 54.7
MD15G1275100 Malus domestica HOM05D000065 ORTHO05D001606 7.9e-06 53.5 53 54.7
Manes.06G091800 Manihot esculenta HOM05D000065 ORTHO05D003050 7.9e-06 53.5 78 41.0
Potri.012G068700 Populus trichocarpa HOM05D000065 ORTHO05D003050 7.9e-06 53.5 72 45.8
Prupe.5G194400 Prunus persica HOM05D000065 ORTHO05D003050 7.9e-06 53.5 54 50.0
SalBow7G3679 Salvia bowleyana HOM05D000065 ORTHO05D003050 7.9e-06 53.5 54 50.0
SEGI_04058 Sequoiadendron giganteum HOM05D000065 ORTHO05D003050 7.9e-06 53.5 74 41.9
vmacro17538 Vaccinium macrocarpon HOM05D000065 ORTHO05D003050 7.9e-06 53.5 54 50.0


User provided reference genes

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