Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 2.1e-88 328.9 158 100.0
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 8.0e-56 220.7 144 72.9
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 2.6e-54 215.7 238 50.4
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 7.5e-54 214.2 206 58.3
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 1.1e-52 210.3 239 50.6
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 4.1e-52 208.4 230 51.3
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 7.0e-52 207.6 236 50.4
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 1.2e-51 206.8 232 49.6
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 7.7e-51 204.1 222 50.9
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 7.7e-51 204.1 222 50.9
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 2.2e-50 202.6 237 48.5
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 6.5e-50 201.1 239 47.3
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 1.5e-49 199.9 240 47.9
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 1.5e-49 199.9 233 47.2
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 1.9e-49 199.5 239 47.7
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.9e-49 199.5 239 48.1
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 2.5e-49 199.1 238 47.5
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 3.2e-49 198.7 243 46.9
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.2e-48 196.8 239 48.1
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.6e-48 196.4 238 46.2
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 2.7e-48 195.7 233 47.2
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 3.6e-48 195.3 227 46.7
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 6.1e-48 194.5 237 47.7
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 6.1e-48 194.5 222 47.3
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 8.0e-48 194.1 232 46.1
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 8.0e-48 194.1 237 46.4
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 8.0e-48 194.1 219 48.9
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 1.0e-47 193.7 239 46.9
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.0e-47 193.7 232 46.1
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 1.0e-47 193.7 232 46.1
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.0e-47 193.7 237 46.8
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 1.4e-47 193.4 236 46.6
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 1.4e-47 193.4 234 47.0
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 3.0e-47 192.2 222 46.8
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 5.2e-47 191.4 242 44.6
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 6.8e-47 191.0 229 46.3
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 8.8e-47 190.7 242 45.0
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 1.2e-46 190.3 230 46.5
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.2e-46 190.3 222 46.8
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 1.5e-46 189.9 222 48.2
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 2.0e-46 189.5 237 44.3
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 2.6e-46 189.1 222 47.7
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 2.6e-46 189.1 222 47.7
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 2.6e-46 189.1 239 45.2
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 3.4e-46 188.7 240 43.8
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 3.4e-46 188.7 229 45.9
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 3.4e-46 188.7 163 56.4
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 7.5e-46 187.6 245 45.3
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 7.5e-46 187.6 239 44.4
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 9.8e-46 187.2 222 45.5
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 1.3e-45 186.8 228 46.9
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 2.8e-45 185.7 242 44.2
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 2.8e-45 185.7 222 46.4
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 3.7e-45 185.3 232 44.8
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 3.7e-45 185.3 240 43.8
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 3.7e-45 185.3 228 46.5
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 4.8e-45 184.9 222 45.5
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 4.8e-45 184.9 228 46.5
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 1.1e-44 183.7 239 43.5
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 1.1e-44 183.7 248 42.3
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 3.1e-44 182.2 241 43.2
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 7.0e-44 181.0 226 42.9
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 7.0e-44 181.0 243 42.4
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 9.1e-44 180.6 240 42.1
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.6e-43 179.9 239 41.4
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 2.0e-43 179.5 244 43.9
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 3.5e-43 178.7 236 41.9
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 3.5e-43 178.7 240 41.7
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 3.5e-43 178.7 240 41.7
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 3.5e-43 178.7 236 41.9
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 3.5e-43 178.7 228 40.8
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 4.5e-43 178.3 229 42.8
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 4.5e-43 178.3 237 42.6
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 5.9e-43 177.9 236 41.9
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 7.7e-43 177.6 235 42.1
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.7e-42 176.4 243 42.0
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.7e-42 176.4 243 42.0
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 1.7e-42 176.4 242 43.4
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.9e-42 175.6 224 44.6
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 5.0e-42 174.9 243 40.7
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 8.5e-42 174.1 239 43.9
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 1.5e-41 173.3 222 42.8
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 3.2e-41 172.2 245 40.8
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 3.2e-41 172.2 234 41.5
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 1.6e-40 169.9 225 42.7
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 2.1e-40 169.5 227 42.7
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.0e-39 167.2 229 42.4
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 2.0e-38 162.9 176 49.4
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.3e-37 160.2 218 43.1
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 2.2e-37 159.5 228 42.1
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 4.1e-36 155.2 176 47.2
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 5.9e-35 151.4 276 37.7
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 1.3e-34 150.2 234 36.8
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 8.6e-34 147.5 197 43.7
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 8.9e-31 137.5 246 37.4
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 1.5e-30 136.7 107 62.6
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 7.5e-30 134.4 209 38.8
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.2e-29 132.9 195 41.0
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 2.9e-29 132.5 76 81.6
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 4.9e-29 131.7 231 37.2
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 1.2e-27 127.1 76 77.6
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 1.3e-26 123.6 76 76.3
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 2.3e-26 122.9 76 73.7
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 3.9e-26 122.1 85 68.2
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 5.0e-26 121.7 150 44.0
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 4.3e-25 118.6 222 32.4
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 1.5e-22 110.2 106 59.4
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 2.9e-21 105.9 76 63.2
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 2.7e-19 99.4 84 57.1
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 6.0e-19 98.2 61 70.5
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 7.8e-19 97.8 84 56.0
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 3.1e-15 85.9 278 25.9
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 8.9e-15 84.3 51 70.6
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 2.6e-14 82.8 61 62.3
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 2.9e-13 79.3 166 33.7
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 6.4e-13 78.2 79 50.6
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 1.4e-12 77.0 53 69.8
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 1.3e-10 70.5 261 24.9
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 3.9e-10 68.9 47 57.4
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 8.6e-10 67.8 39 76.9
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 5.6e-09 65.1 63 54.0
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 8.9e-07 57.8 51 60.8
C05p20820 Brassica napus HOM05D006717 ORTHO05D008139 4.4e-06 55.5 34 70.6
BolC5t30781H Brassica oleracea HOM05D006717 ORTHO05D008139 5.8e-06 55.1 34 70.6


User provided reference genes

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