Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 2.8e-67 258.5 128 100.0
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 3.4e-57 224.9 128 82.8
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 3.8e-56 221.5 127 82.7
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 8.4e-56 220.3 127 82.7
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 1.4e-55 219.5 127 82.7
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 1.9e-55 219.2 128 78.9
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 4.2e-55 218.0 127 79.5
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 7.1e-55 217.2 128 78.9
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 9.3e-55 216.9 128 79.7
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 1.6e-54 216.1 127 82.7
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.6e-54 216.1 124 82.3
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 1.6e-54 216.1 128 78.9
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 2.1e-54 215.7 127 81.1
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 2.7e-54 215.3 128 79.7
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 2.7e-54 215.3 128 80.5
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 3.5e-54 214.9 118 85.6
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 6.0e-54 214.2 128 78.1
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.0e-53 213.4 128 79.7
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 1.8e-53 212.6 127 78.7
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 3.0e-53 211.8 128 79.7
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 3.0e-53 211.8 127 79.5
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 3.0e-53 211.8 128 75.8
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.9e-53 211.5 121 82.6
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.9e-53 211.5 127 79.5
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 3.9e-53 211.5 128 75.8
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 3.9e-53 211.5 128 75.8
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 3.9e-53 211.5 127 78.0
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 5.1e-53 211.1 121 82.6
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 5.1e-53 211.1 117 86.3
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 1.9e-52 209.1 127 79.5
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.5e-52 208.8 127 75.6
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 4.3e-52 208.0 121 81.0
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 4.3e-52 208.0 128 78.1
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 5.7e-52 207.6 126 77.8
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 7.4e-52 207.2 118 83.9
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 9.6e-52 206.8 127 76.4
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 9.6e-52 206.8 127 76.4
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 1.6e-51 206.1 127 78.0
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 1.6e-51 206.1 127 80.3
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 1.6e-51 206.1 128 77.3
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 3.7e-51 204.9 121 80.2
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 4.8e-51 204.5 127 76.4
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 8.2e-51 203.8 136 75.0
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 1.8e-50 202.6 116 81.9
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 1.8e-50 202.6 116 81.9
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 4.1e-50 201.4 121 78.5
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 9.0e-50 200.3 120 77.5
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 9.0e-50 200.3 128 75.8
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 2.0e-49 199.1 113 81.4
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 4.5e-49 198.0 117 81.2
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 4.5e-49 198.0 126 73.8
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 4.5e-49 198.0 126 73.0
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 5.8e-49 197.6 126 73.0
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 5.8e-49 197.6 126 73.0
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 5.8e-49 197.6 126 73.0
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 5.8e-49 197.6 126 73.8
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 1.0e-48 196.8 125 73.6
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.0e-48 196.8 149 64.4
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 1.7e-48 196.1 126 73.0
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 2.9e-48 195.3 126 73.0
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 2.9e-48 195.3 126 73.0
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 2.9e-48 195.3 126 73.0
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 2.9e-48 195.3 143 67.1
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 3.8e-48 194.9 128 71.1
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 8.4e-48 193.7 117 78.6
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 1.1e-47 193.4 117 79.5
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 1.4e-47 193.0 117 76.9
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 1.4e-47 193.0 117 78.6
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 1.9e-47 192.6 124 72.6
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 1.9e-47 192.6 124 72.6
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 2.5e-47 192.2 126 69.8
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 5.5e-47 191.0 126 70.6
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 9.3e-47 190.3 124 74.2
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 1.2e-46 189.9 117 77.8
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 1.6e-46 189.5 127 73.2
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 2.7e-46 188.7 126 69.8
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 2.7e-46 188.7 128 71.1
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 3.5e-46 188.3 118 78.0
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 7.9e-46 187.2 113 76.1
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 7.9e-46 187.2 125 72.0
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 1.0e-45 186.8 121 73.6
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 1.8e-45 186.0 121 71.9
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 1.8e-45 186.0 118 71.2
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 1.8e-45 186.0 115 78.3
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 2.3e-45 185.7 121 72.7
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 2.3e-45 185.7 123 69.9
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.3e-45 185.7 141 63.8
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 2.3e-45 185.7 128 70.3
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 3.9e-45 184.9 117 75.2
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 8.7e-45 183.7 128 69.5
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 8.7e-45 183.7 128 69.5
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.1e-44 183.3 128 68.8
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.1e-44 183.3 128 68.8
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 1.1e-44 183.3 123 74.8
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 1.9e-44 182.6 146 64.4
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 2.5e-44 182.2 118 74.6
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 3.3e-44 181.8 127 70.9
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 3.3e-44 181.8 111 75.7
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 4.3e-44 181.4 125 70.4
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 4.3e-44 181.4 127 70.1
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 4.3e-44 181.4 111 76.6
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 2.8e-43 178.7 114 73.7
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 6.3e-43 177.6 122 72.1
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 1.4e-42 176.4 125 70.4
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.4e-42 175.6 127 66.1
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 1.4e-37 159.8 127 58.3
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 2.0e-28 129.4 88 73.9
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 1.3e-27 126.7 83 73.5
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.1e-26 123.6 73 79.5
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 2.0e-25 119.4 112 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 4.5e-25 118.2 112 51.8
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 1.7e-24 116.3 68 77.9
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 2.2e-24 115.9 112 50.9
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 2.9e-24 115.5 72 69.4
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 1.9e-23 112.8 73 71.2
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 2.5e-23 112.5 68 72.1
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 3.2e-23 112.1 67 77.6
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 3.2e-23 112.1 68 70.6
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 3.2e-23 112.1 67 73.1
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 2.7e-22 109.0 68 70.6
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 2.7e-22 109.0 77 66.2
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 4.4e-20 101.7 82 65.9
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 9.7e-20 100.5 59 81.4
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 3.7e-19 98.6 59 81.4
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 6.3e-19 97.8 61 77.0
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 4.1e-18 95.1 114 41.2
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 7.0e-18 94.4 60 78.3
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 2.6e-17 92.4 58 69.0
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.3e-16 90.1 57 75.4
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 2.2e-16 89.4 59 72.9
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 2.2e-16 89.4 71 62.0
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 2.9e-16 89.0 63 66.7
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.5e-15 86.7 57 77.2
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 6.1e-14 81.3 122 39.3
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 2.0e-12 76.3 68 57.4
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 2.0e-12 76.3 101 41.6
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 3.4e-12 75.5 53 67.9
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 3.4e-12 75.5 69 53.6
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 7.5e-12 74.3 68 55.9
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 9.8e-12 73.9 45 75.6
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 2.7e-09 65.9 46 65.2


User provided reference genes

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