Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 4.0e-93 344.7 171 100.0
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 3.5e-81 305.1 171 88.3
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 5.0e-80 301.2 159 93.7
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 4.2e-79 298.1 171 84.2
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 1.6e-78 296.2 171 84.8
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 1.0e-77 293.5 171 83.6
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 1.4e-77 293.1 171 82.5
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 1.4e-77 293.1 171 85.4
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 1.2e-76 290.0 170 82.9
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 1.2e-76 290.0 170 80.0
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 5.7e-76 287.7 173 79.8
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 2.8e-75 285.4 171 80.7
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 6.3e-75 284.3 171 81.3
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.2e-74 282.0 159 84.3
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 4.1e-74 281.6 171 80.1
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 7.0e-74 280.8 159 84.3
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.0e-69 266.9 162 80.9
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.8e-69 266.2 171 74.3
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 2.3e-69 265.8 159 80.5
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 2.3e-69 265.8 159 80.5
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 6.8e-69 264.2 167 76.6
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.2e-68 263.5 153 82.4
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 2.2e-67 259.2 171 72.5
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.9e-67 258.8 167 77.2
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 3.7e-67 258.5 167 76.6
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 8.3e-67 257.3 167 76.6
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 1.4e-66 256.5 167 75.4
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 1.9e-66 256.1 157 78.3
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 4.1e-66 255.0 153 79.7
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 5.4e-66 254.6 167 74.9
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 9.2e-66 253.8 161 75.2
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 2.0e-65 252.7 171 70.8
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 1.0e-64 250.4 167 73.1
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 1.0e-64 250.4 167 73.1
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.3e-64 249.2 170 74.7
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 3.9e-64 248.4 167 74.9
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 6.6e-64 247.7 170 72.9
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 1.1e-63 246.9 167 74.3
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 1.1e-63 246.9 167 72.5
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.5e-63 246.5 168 73.2
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 3.3e-63 245.4 167 73.7
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.3e-63 245.4 167 73.7
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 5.6e-63 244.6 167 73.1
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 9.5e-63 243.8 167 73.1
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.2e-62 243.4 170 73.5
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.2e-62 243.4 167 73.7
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.6e-62 243.0 167 72.5
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.6e-62 243.0 167 72.5
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 8.0e-62 240.7 167 70.1
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.8e-61 239.6 171 70.2
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 4.0e-61 238.4 172 68.6
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 5.2e-61 238.0 157 73.2
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 8.9e-61 237.3 155 74.2
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 1.2e-60 236.9 163 73.0
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.2e-60 236.9 157 72.6
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.2e-60 236.9 171 71.9
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.2e-60 236.9 171 71.9
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 4.4e-60 235.0 158 72.2
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 5.8e-60 234.6 157 75.8
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 7.5e-60 234.2 165 70.3
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 9.8e-60 233.8 156 75.0
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 1.7e-59 233.0 156 72.4
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.7e-59 233.0 166 70.5
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 2.2e-59 232.6 165 69.7
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 2.2e-59 232.6 165 69.7
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 2.2e-59 232.6 150 75.3
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 2.9e-59 232.3 172 66.9
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 3.7e-59 231.9 158 74.7
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 3.7e-59 231.9 170 68.2
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 6.4e-59 231.1 162 70.4
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 8.3e-59 230.7 172 66.9
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 8.3e-59 230.7 155 74.2
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.1e-58 230.3 170 67.1
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.4e-58 229.9 170 66.5
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-58 229.9 167 71.3
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-58 229.9 167 71.3
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-58 229.9 167 71.3
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-58 229.9 167 71.3
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-58 229.9 167 71.3
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.9e-58 229.6 164 68.9
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.9e-58 229.6 158 73.4
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 1.9e-58 229.6 164 67.1
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 3.2e-58 228.8 164 69.5
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 4.1e-58 228.4 162 70.4
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 4.1e-58 228.4 165 68.5
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 5.4e-58 228.0 158 73.4
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 5.4e-58 228.0 164 70.1
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 7.1e-58 227.6 164 69.5
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 9.2e-58 227.3 152 73.0
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 9.2e-58 227.3 152 73.0
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 9.2e-58 227.3 162 70.4
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 1.2e-57 226.9 162 69.8
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 1.6e-57 226.5 164 68.9
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 1.6e-57 226.5 164 68.9
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 1.6e-57 226.5 164 68.9
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.6e-57 226.5 162 69.1
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 2.1e-57 226.1 164 68.9
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 6.0e-57 224.6 158 72.8
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 1.0e-56 223.8 168 66.1
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.0e-56 223.8 155 69.0
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 1.3e-56 223.4 135 77.8
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.7e-56 223.0 153 69.3
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 2.3e-56 222.6 155 70.3
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 3.0e-56 222.2 155 71.0
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 6.6e-56 221.1 155 70.3
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 6.6e-56 221.1 155 70.3
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 2.5e-55 219.2 172 65.1
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 3.3e-55 218.8 158 69.0
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 2.1e-54 216.1 162 69.1
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 3.1e-53 212.2 164 67.1
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 4.0e-53 211.8 155 69.0
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 2.0e-52 209.5 164 64.6
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 4.4e-52 208.4 163 63.2
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 8.3e-51 204.1 163 63.8
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 5.4e-50 201.4 165 62.4
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 6.0e-49 198.0 159 65.4
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 1.0e-48 197.2 156 61.5
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 1.9e-47 193.0 162 58.0
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 7.3e-47 191.0 162 58.0
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.6e-46 189.9 167 60.5
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 6.2e-46 188.0 134 69.4
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 3.1e-45 185.7 128 70.3
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.3e-43 180.3 163 50.9
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.7e-43 179.9 170 49.4
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 8.4e-43 177.6 162 56.2
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 1.9e-42 176.4 132 67.4
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 1.1e-39 167.2 115 72.2
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 3.3e-39 165.6 165 54.5
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 4.3e-39 165.2 95 82.1
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 1.3e-38 163.7 99 79.8
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 3.6e-38 162.2 132 60.6
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.4e-37 160.2 156 57.1
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 6.6e-32 141.4 163 50.9
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.1e-29 134.0 101 70.3
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 1.2e-28 130.6 152 50.7
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.5e-28 130.2 115 60.9
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.2e-27 126.3 156 50.0
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 2.6e-12 76.3 35 94.3
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 3.8e-11 72.4 161 34.8
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 1.5e-07 60.5 112 33.9
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 5.7e-07 58.5 130 32.3
PGR102G0163 Punica granatum HOM05D003144 ORTHO05D003539 9.7e-07 57.8 129 29.5
HPP92_013478 Vanilla planifolia HOM05D003144 ORTHO05D003539 2.2e-06 56.6 128 32.8
Potri.007G021600 Populus trichocarpa HOM05D003144 ORTHO05D003539 2.8e-06 56.2 116 31.0
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 3.7e-06 55.8 112 29.5
Cre06.g295250 Chlamydomonas reinhardtii HOM05D003144 ORTHO05D003539 4.8e-06 55.5 117 32.5
Migut.H02525 Erythranthe guttata HOM05D003144 ORTHO05D003539 6.3e-06 55.1 117 30.8
CiPaw.02G020200 Carya illinoinensis HOM05D003144 ORTHO05D003539 8.2e-06 54.7 116 31.9
Glyma.01G171800 Glycine max HOM05D003144 ORTHO05D003539 8.2e-06 54.7 130 30.8


User provided reference genes

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