Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 1.3e-191 672.9 352 100.0
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 4.1e-161 571.6 356 84.8
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 4.1e-161 571.6 358 82.1
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 4.1e-161 571.6 358 82.1
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 2.9e-159 565.5 355 81.7
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 8.8e-156 553.9 350 82.3
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 5.7e-155 551.2 329 82.7
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 1.7e-154 549.7 329 82.7
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 2.2e-154 549.3 350 79.1
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 3.8e-151 538.5 328 82.6
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 2.3e-148 529.3 352 75.9
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 3.0e-148 528.9 325 81.5
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 8.9e-148 527.3 327 80.1
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 2.6e-147 525.8 326 79.8
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 3.4e-147 525.4 330 79.7
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 4.4e-147 525.0 327 79.8
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 5.7e-147 524.6 348 81.9
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 5.7e-147 524.6 322 80.4
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 9.8e-147 523.9 326 79.1
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 2.9e-146 522.3 328 78.7
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.8e-145 519.6 329 79.0
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 2.4e-145 519.2 326 78.8
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 3.2e-145 518.8 310 82.9
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 4.1e-145 518.5 327 78.0
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 4.1e-145 518.5 328 78.4
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 9.2e-145 517.3 329 79.0
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 1.2e-144 516.9 329 78.7
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 2.7e-144 515.8 329 79.0
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.6e-144 515.0 328 77.4
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.6e-144 515.0 329 77.5
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 4.6e-144 515.0 310 81.0
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 7.8e-144 514.2 328 77.7
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 7.8e-144 514.2 328 78.0
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 1.3e-143 513.5 326 78.8
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 1.7e-143 513.1 350 76.0
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 1.7e-143 513.1 302 83.4
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.3e-143 512.7 328 78.0
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 2.9e-143 512.3 327 77.1
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 2.9e-143 512.3 329 76.6
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 5.0e-143 511.5 349 75.1
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 5.0e-143 511.5 329 77.5
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 6.6e-143 511.1 326 77.3
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 8.6e-143 510.8 328 77.7
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 8.6e-143 510.8 329 76.9
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 1.5e-142 510.0 325 76.6
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 1.5e-142 510.0 295 83.4
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 1.9e-142 509.6 325 77.2
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.9e-142 509.6 328 79.3
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.9e-142 509.6 327 76.1
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.9e-142 509.6 353 76.8
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 3.3e-142 508.8 325 78.2
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 3.3e-142 508.8 329 78.1
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 4.3e-142 508.4 325 77.8
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 4.3e-142 508.4 325 77.8
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 4.3e-142 508.4 329 77.5
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 9.5e-142 507.3 337 76.6
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.2e-141 506.9 328 77.4
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 1.6e-141 506.5 325 76.9
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 3.6e-141 505.4 327 77.7
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 3.6e-141 505.4 291 84.9
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 4.7e-141 505.0 328 77.1
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 4.7e-141 505.0 321 77.6
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 6.2e-141 504.6 328 77.1
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 6.2e-141 504.6 343 75.5
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 6.2e-141 504.6 328 77.4
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 1.0e-140 503.8 334 76.9
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.4e-140 503.4 350 72.0
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.8e-140 503.1 327 77.4
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 1.8e-140 503.1 325 77.5
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 2.3e-140 502.7 328 77.1
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.3e-140 502.7 352 73.9
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 2.3e-140 502.7 325 77.5
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 3.1e-140 502.3 327 76.5
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 4.0e-140 501.9 327 77.4
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 8.9e-140 500.7 310 80.0
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 1.2e-139 500.4 326 77.0
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.2e-139 500.4 348 71.0
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 1.5e-139 500.0 339 76.4
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 4.4e-139 498.4 326 77.0
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 5.8e-139 498.0 327 77.1
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.4e-137 493.4 329 74.5
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 1.9e-137 493.0 292 80.1
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 5.4e-137 491.5 405 64.9
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 7.0e-137 491.1 306 79.4
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 9.2e-137 490.7 284 82.4
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 2.0e-136 489.6 327 76.5
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 2.7e-136 489.2 389 66.1
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 2.7e-136 489.2 325 75.1
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.7e-135 486.5 329 75.1
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 3.9e-135 485.3 318 77.4
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 5.0e-135 485.0 326 74.5
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 3.1e-132 475.7 352 67.6
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 4.0e-132 475.3 347 69.7
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 8.9e-132 474.2 352 67.3
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 8.3e-130 467.6 310 77.1
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.4e-129 466.1 366 69.9
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 4.1e-129 465.3 338 68.6
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 7.1e-129 464.5 268 82.8
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 7.1e-129 464.5 272 82.0
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 7.1e-129 464.5 307 73.9
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.5e-128 462.2 325 72.3
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 4.6e-128 461.8 329 72.3
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 5.1e-127 458.4 325 72.0
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 8.6e-127 457.6 270 81.9
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 8.1e-125 451.1 321 74.8
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 8.1e-125 451.1 304 79.3
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 1.8e-124 449.9 301 76.1
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 6.8e-124 448.0 305 77.0
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 4.6e-120 435.3 318 71.4
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 8.6e-119 431.0 301 71.8
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 3.4e-115 419.1 286 69.9
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 7.6e-115 417.9 288 68.1
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 3.5e-112 409.1 287 70.0
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.4e-108 397.1 279 71.0
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.5e-107 393.7 289 64.7
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 7.6e-107 391.3 260 75.8
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.9e-105 386.7 310 65.8
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 2.7e-104 382.9 253 73.9
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 1.0e-103 380.9 228 86.0
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 3.9e-103 379.0 260 73.1
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.5e-91 340.5 242 78.5
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 2.1e-88 330.1 220 77.3
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.8e-68 263.8 352 49.1
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.3e-58 231.1 137 82.5
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.7e-58 230.7 153 69.9
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.7e-58 230.7 139 77.7
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 8.5e-58 228.4 170 70.0
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.9e-57 227.3 154 77.3
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 5.3e-52 209.1 132 73.5
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.6e-48 197.6 108 83.3
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 6.8e-47 192.2 108 79.6
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 9.8e-38 161.8 129 59.7
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 5.4e-36 156.0 276 40.6
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 2.7e-35 153.7 112 66.1
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.6e-32 144.4 315 32.1
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 6.8e-31 139.0 117 59.8
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 7.8e-27 125.6 100 65.0
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 3.1e-23 113.6 86 65.1
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.3e-21 108.2 87 58.6
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.2e-21 107.5 64 79.7
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 1.1e-20 105.1 296 30.1
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 8.6e-18 95.5 91 58.2
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.1e-17 95.1 93 59.1
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 1.6e-16 91.3 52 82.7
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 2.1e-16 90.9 53 84.9
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 1.8e-15 87.8 53 71.7
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 4.0e-15 86.7 81 49.4
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 2.6e-14 84.0 53 73.6
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 3.0e-10 70.5 51 64.7
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 1.2e-08 65.1 58 62.1
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 3.1e-07 60.5 31 90.3


User provided reference genes

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