Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu029180.1 Olea europaea HOM05D002804 ORTHO05D003755 7.4e-146 520.8 313 100.0
MSTRG.5178 Avicennia marina HOM05D002804 ORTHO05D003755 1.5e-90 337.0 313 68.4
Migut.N00995 Erythranthe guttata HOM05D002804 ORTHO05D003755 6.8e-75 285.0 305 62.0
Nitab4.5_0004889g0010 Nicotiana tabacum HOM05D002804 ORTHO05D003755 5.8e-74 282.0 285 58.6
unitig_22.g5757 Utricularia gibba HOM05D002804 ORTHO05D003755 7.5e-74 281.6 275 61.5
Solyc01g102470.2 Solanum lycopersicum HOM05D002804 ORTHO05D003755 3.0e-70 269.6 308 56.5
Sopen01g044910 Solanum pennellii HOM05D002804 ORTHO05D003755 3.9e-70 269.2 313 56.2
Lj5A312T57 Lonicera japonica HOM05D002804 ORTHO05D003755 4.7e-68 262.3 315 54.6
Nitab4.5_0004090g0070 Nicotiana tabacum HOM05D002804 ORTHO05D003755 8.1e-68 261.5 248 64.1
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 5.4e-64 248.8 298 50.3
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 1.3e-62 244.2 290 53.1
Dinv30965 Davidia involucrata HOM05D002804 ORTHO05D003755 6.0e-55 218.8 215 60.0
Thecc.08G200300 Theobroma cacao HOM05D002804 ORTHO05D003755 2.1e-52 210.3 322 55.9
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 4.0e-51 206.1 268 47.4
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 2.2e-49 200.3 321 46.7
Cc02_g36880 Coffea canephora HOM05D002804 ORTHO05D003755 4.9e-49 199.1 338 45.6
CAN.G1379.37 Capsicum annuum HOM05D002804 ORTHO05D003755 6.4e-49 198.7 266 51.1
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 1.2e-47 194.5 318 48.1
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 2.7e-47 193.4 288 47.9
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.0e-46 191.4 244 47.1
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 3.0e-46 189.9 294 48.0
Medtr1g085280 Medicago truncatula HOM05D002804 ORTHO05D003755 1.5e-45 187.6 258 52.7
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 1.9e-45 187.2 306 48.0
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 4.3e-45 186.0 243 56.0
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 4.3e-45 186.0 245 51.0
Aa31LG1G21630 Aethionema arabicum HOM05D007539 ORTHO05D009315 7.3e-45 185.3 241 58.1
Glyma.20G089500 Glycine max HOM05D002804 ORTHO05D003755 1.3e-44 184.5 239 55.6
QL03p011442 Quercus lobata HOM05D002804 ORTHO05D003755 3.6e-44 183.0 219 60.7
Phvul.007G207300 Phaseolus vulgaris HOM05D002804 ORTHO05D003755 6.2e-44 182.2 282 53.9
Atru.chr12.1496 Acer truncatum HOM05D002804 ORTHO05D003755 1.4e-43 181.0 260 53.5
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 2.4e-43 180.3 249 50.6
SGA_v2.0_scaffold658G53387 Striga asiatica HOM05D002804 ORTHO05D003755 1.5e-42 177.6 319 51.1
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-41 173.7 205 53.2
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 2.2e-41 173.7 294 45.6
AT5G03560 Arabidopsis thaliana HOM05D002804 ORTHO05D003755 1.9e-40 170.6 201 59.7
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 1.9e-40 170.6 264 48.5
FAN02G1170 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.3e-40 168.3 226 57.5
Sc14g0008950 Simmondsia chinensis HOM05D002804 ORTHO05D003755 4.6e-39 166.0 243 47.7
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.0e-39 165.6 157 58.0
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 2.3e-38 163.7 291 46.7
ECA236G4290 Erigeron canadensis HOM05D002804 ORTHO05D003755 5.1e-38 162.5 282 45.4
MD04G1183300 Malus domestica HOM05D002804 ORTHO05D003755 1.9e-37 160.6 236 54.2
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 3.3e-37 159.8 242 44.6
Sed0019381 Sechium edule HOM05D002804 ORTHO05D003755 7.4e-37 158.7 268 50.7
EL10Ac6g13418 Beta vulgaris HOM05D002804 ORTHO05D003755 5.3e-35 152.5 300 50.3
Actinidia17724 Actinidia chinensis HOM05D002804 ORTHO05D003755 1.2e-34 151.4 315 42.2
Duzib116G0715 Durio zibethinus HOM05D002804 ORTHO05D003755 2.0e-34 150.6 253 48.6
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 2.0e-34 150.6 228 42.5
Gorai.006G131500 Gossypium raimondii HOM05D002804 ORTHO05D003755 5.8e-34 149.1 321 44.9
Gohir.D09G113800 Gossypium hirsutum HOM05D002804 ORTHO05D003755 7.6e-34 148.7 321 44.9
HanXRQChr07g0193711 Helianthus annuus HOM05D002804 ORTHO05D003755 1.7e-33 147.5 292 45.9
SalBow4G0464 Salvia bowleyana HOM05D002804 ORTHO05D003755 1.4e-32 144.4 310 45.2
Psat6g157320 Pisum sativum HOM05D002804 ORTHO05D003755 1.9e-32 144.1 173 54.9
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 5.5e-32 142.5 211 47.9
Zm00001eb429950 Zea mays HOM05D002804 ORTHO05D003755 5.5e-32 142.5 244 46.7
Ah.02g130510 Amaranthus hybridus HOM05D002804 ORTHO05D003755 1.2e-31 141.4 305 50.5
Carub.0006s0240 Capsella rubella HOM05D002804 ORTHO05D003755 3.5e-31 139.8 242 49.6
Prupe.6G301800 Prunus persica HOM05D002804 ORTHO05D003755 1.3e-30 137.9 212 53.3
HPP92_022010 Vanilla planifolia HOM05D002804 ORTHO05D003755 1.3e-30 137.9 239 49.8
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 2.5e-29 133.7 188 57.4
Ca_10220_v3 Cicer arietinum L. HOM05D002804 ORTHO05D003755 4.3e-29 132.9 173 52.0
DCAR_003256 Daucus carota HOM05D002804 ORTHO05D003755 4.3e-29 132.9 164 43.9
Peaxi162Scf01065g00002 Petunia axillaris HOM05D002804 ORTHO05D003755 9.6e-29 131.7 155 48.4
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 2.8e-28 130.2 159 50.9
THA.LOC104826924 Tarenaya hassleriana HOM05D002804 ORTHO05D003755 6.2e-28 129.0 242 49.2
CSS0047980 Camellia sinensis var. sinensis HOM05D002804 ORTHO05D003755 2.9e-25 120.2 199 51.8
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 4.9e-25 119.4 141 49.6
Lj5A49T37 Lonicera japonica HOM05D002804 ORTHO05D003755 1.4e-24 117.9 198 53.0
CSS0012453 Camellia sinensis var. sinensis HOM05D002804 ORTHO05D003755 3.2e-24 116.7 124 66.9
RcHm_v2.0_Chr3g0459161 Rosa chinensis HOM05D002804 ORTHO05D003755 4.2e-24 116.3 207 34.3
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 9.3e-24 115.2 179 48.6
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 1.6e-23 114.4 91 59.3
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 2.1e-23 114.0 91 60.4
FAN05G2457 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.7e-23 113.6 206 35.0
FAN14G5607 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.9e-23 112.1 239 31.8
RcHm_v2.0_Chr3g0459221 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-22 111.3 217 42.4
FvH4_6g08870 Fragaria vesca HOM05D002804 ORTHO05D003755 2.3e-22 110.5 207 34.3
FvH4_6g08940 Fragaria vesca HOM05D002804 ORTHO05D003755 3.9e-22 109.8 217 31.8
FAN02G4619 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-21 108.2 217 31.3
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 1.1e-21 108.2 162 44.4
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 3.3e-21 106.7 179 43.6
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 4.3e-21 106.3 162 43.8
FAN02G0182 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-20 104.4 203 33.5
FAN05G3459 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.7e-20 103.2 216 31.0
SEGI_29468 Sequoiadendron giganteum HOM05D002804 ORTHO05D003755 4.1e-19 99.8 212 50.0
RcHm_v2.0_Chr3g0459171 Rosa chinensis HOM05D002804 ORTHO05D003755 2.0e-18 97.4 219 37.0
AUR62024179 Chenopodium quinoa HOM05D002804 ORTHO05D003755 2.6e-18 97.1 92 55.4
MD12G1196700 Malus domestica HOM05D002804 ORTHO05D003755 1.0e-17 95.1 176 47.2
RcHm_v2.0_Chr3g0459201 Rosa chinensis HOM05D002804 ORTHO05D003755 5.0e-17 92.8 235 37.4
Aqoxy314s002 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 6.5e-17 92.4 145 55.2
RcHm_v2.0_Chr3g0459181 Rosa chinensis HOM05D002804 ORTHO05D003755 2.5e-16 90.5 248 30.2
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-15 87.4 185 39.5
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 2.7e-15 87.0 195 40.5
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.1e-15 85.9 185 41.1
FvH4_7g08991 Fragaria vesca HOM05D002804 ORTHO05D003755 3.0e-14 83.6 194 30.4
FAN06G4842 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.0e-14 83.6 194 30.4
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.5e-13 80.5 185 41.1
MD16G1177800 Malus domestica HOM05D002804 ORTHO05D003755 4.3e-13 79.7 185 29.2
MD16G1193600 Malus domestica HOM05D002804 ORTHO05D003755 5.7e-13 79.3 191 29.3
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-12 77.8 190 35.8
RcHm_v2.0_Chr7g0235851 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-12 77.8 184 36.4
RcHm_v2.0_Chr7g0235981 Rosa chinensis HOM05D002804 ORTHO05D003755 2.2e-12 77.4 185 36.2
RcHm_v2.0_Chr0c11g0499471 Rosa chinensis HOM05D002804 ORTHO05D003755 2.8e-12 77.0 188 34.6
BraA03t09504Z Brassica rapa HOM05D007539 ORTHO05D009315 4.8e-12 76.3 51 72.5
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 4.8e-12 76.3 190 35.3
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 4.8e-12 76.3 190 35.3
FAN10G1430 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-11 75.1 180 37.2
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-11 74.7 172 37.2
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 2.4e-11 73.9 174 30.5
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.4e-11 73.9 179 36.9
RcHm_v2.0_Chr7g0235841 Rosa chinensis HOM05D002804 ORTHO05D025426 4.1e-11 73.2 194 34.5
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 5.3e-11 72.8 140 34.3
FAN10G1692 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.3e-11 72.8 185 36.2
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.3e-11 72.8 175 37.1
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 6.9e-11 72.4 189 26.5
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.1e-11 72.0 137 33.6
FAN08G1735 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-10 71.6 142 31.7
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 1.2e-10 71.6 247 24.7
RcHm_v2.0_Chr7g0236231 Rosa chinensis HOM05D002804 ORTHO05D003755 1.5e-10 71.2 188 35.1
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 2.6e-10 70.5 143 39.9
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 3.4e-10 70.1 179 36.9
COL.COLO4_05836 Corchorus olitorius HOM05D002804 ORTHO05D003755 4.5e-10 69.7 244 30.7
FAN25G3079 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.5e-10 69.7 142 39.4
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 4.5e-10 69.7 190 27.9
FAN04G3225 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.9e-10 69.3 188 35.6
AUR62005554 Chenopodium quinoa HOM05D002804 ORTHO05D003755 7.7e-10 68.9 112 54.5
FvH4_6g08910 Fragaria vesca HOM05D002804 ORTHO05D003755 7.7e-10 68.9 151 29.1
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.7e-10 68.9 137 48.2
RcHm_v2.0_Chr3g0457771 Rosa chinensis HOM05D002804 ORTHO05D003755 7.7e-10 68.9 192 27.6
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.0e-09 68.6 143 38.5
RcHm_v2.0_Chr7g0236591 Rosa chinensis HOM05D002804 ORTHO05D003755 1.0e-09 68.6 259 25.9
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 1.3e-09 68.2 140 40.7
FvH4_5g35320 Fragaria vesca HOM05D002804 ORTHO05D003755 1.3e-09 68.2 137 38.0
FAN18G4551 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-09 68.2 140 38.6
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-09 68.2 191 34.6
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.2e-09 67.4 183 26.8
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-09 67.0 190 26.3
FAN18G1608 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-09 67.0 143 42.7
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 5.0e-09 66.2 196 26.0
FvH4_5g35253 Fragaria vesca HOM05D002804 ORTHO05D003755 5.0e-09 66.2 142 38.0
FAN13G1711 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.5e-09 65.9 142 31.0
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.5e-09 65.5 125 44.8
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-08 65.1 144 38.9
FAN08G3255 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-08 64.3 150 32.0
FAN14G4263 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.5e-08 63.9 244 25.0
FvH4_5g05700 Fragaria vesca HOM05D002804 ORTHO05D003755 3.2e-08 63.5 107 37.4
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 3.2e-08 63.5 143 42.0
FAN18G1140 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.2e-08 63.5 98 37.8
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 3.2e-08 63.5 98 37.8
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 4.2e-08 63.2 98 39.8
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.2e-08 63.2 191 27.2
RcHm_v2.0_Chr7g0235921 Rosa chinensis HOM05D002804 ORTHO05D003755 4.2e-08 63.2 97 37.1
FvH4_7g08990 Fragaria vesca HOM05D002804 ORTHO05D003755 5.5e-08 62.8 106 34.0
FvH4_5g35080 Fragaria vesca HOM05D002804 ORTHO05D003755 9.4e-08 62.0 99 37.4
FAN18G3851 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.1e-07 60.8 205 25.9
RcHm_v2.0_Chr3g0459121 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-07 60.8 158 31.0
RcHm_v2.0_Chr7g0235901 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-07 60.8 56 51.8
RcHm_v2.0_Chr7g0218341 Rosa chinensis HOM05D002804 ORTHO05D003755 2.7e-07 60.5 127 47.2
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 2.7e-07 60.5 165 25.5
FvH4_5g32070 Fragaria vesca HOM05D002804 ORTHO05D003755 3.6e-07 60.1 56 51.8
FAN03G0147 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.7e-07 59.7 107 33.6
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 6.1e-07 59.3 141 29.1
RcHm_v2.0_Chr7g0218371 Rosa chinensis HOM05D002804 ORTHO05D003755 7.9e-07 58.9 133 39.1
FvH4_5g35330 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-06 58.2 87 40.2
FAN02G1490 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.4e-06 58.2 56 51.8
RcHm_v2.0_Chr1g0342991 Rosa chinensis HOM05D002804 ORTHO05D003755 1.8e-06 57.8 92 38.0
Sc14g0008930 Simmondsia chinensis HOM05D002804 ORTHO05D003755 1.8e-06 57.8 39 66.7
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 2.3e-06 57.4 64 40.6
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.0e-06 57.0 56 50.0
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.0e-06 57.0 56 50.0
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 3.0e-06 57.0 144 38.2
FAN04G0362 Fragaria x ananassa HOM05D002804 ORTHO05D003755 5.1e-06 56.2 50 54.0
RcHm_v2.0_Chr7g0235991 Rosa chinensis HOM05D002804 ORTHO05D003755 5.1e-06 56.2 52 53.8
RcHm_v2.0_Chr7g0236191 Rosa chinensis HOM05D002804 ORTHO05D022637 5.1e-06 56.2 178 27.0
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 6.7e-06 55.8 63 42.9
FAN04G2366 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.7e-06 55.8 113 33.6
RcHm_v2.0_Chr7g0235881 Rosa chinensis HOM05D002804 ORTHO05D003755 6.7e-06 55.8 97 32.0
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 8.8e-06 55.5 63 42.9
RcHm_v2.0_Chr0c11g0499501 Rosa chinensis HOM05D002804 ORTHO05D003755 8.8e-06 55.5 53 52.8
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 8.8e-06 55.5 53 52.8
Sed0026070 Sechium edule HOM05D006858 ORTHO05D008767 8.8e-06 55.5 63 41.3


User provided reference genes

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