Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 0.0e+00 1288.9 656 100.0
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 1.0e-136 491.5 696 46.3
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 5.0e-104 382.9 702 38.5
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 2.5e-103 380.6 769 37.1
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 2.3e-96 357.5 701 38.8
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.1e-93 348.6 688 37.8
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 2.6e-92 344.0 687 38.4
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 5.8e-92 342.8 720 35.4
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 2.9e-91 340.5 727 37.6
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 8.3e-91 339.0 686 37.5
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 1.1e-90 338.6 736 35.9
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 1.1e-87 328.6 751 34.2
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.1e-87 328.6 686 36.4
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 7.3e-87 325.9 731 36.3
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.6e-86 324.7 741 36.2
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 8.1e-86 322.4 745 34.8
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 3.1e-85 320.5 687 36.2
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 1.1e-82 312.0 724 35.1
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.6e-81 308.1 681 35.2
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 6.0e-81 306.2 733 34.0
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 7.8e-81 305.8 398 49.0
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 2.3e-80 304.3 312 58.0
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 3.0e-80 303.9 748 35.2
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 1.1e-79 302.0 800 33.2
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 1.6e-78 298.1 389 46.8
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 3.6e-78 297.0 733 33.4
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.1e-77 295.4 795 31.9
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.2e-76 292.0 665 34.4
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 9.9e-76 288.9 735 33.1
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.7e-75 288.1 751 32.6
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 1.7e-75 288.1 746 32.8
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 8.4e-75 285.8 726 35.0
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 2.1e-73 281.2 724 36.3
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 1.7e-72 278.1 671 31.9
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 3.6e-70 270.4 690 33.8
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 2.6e-68 264.2 714 33.6
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 4.4e-68 263.5 659 34.6
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 3.8e-67 260.4 724 32.3
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.9e-66 258.1 675 33.3
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 2.4e-66 257.7 703 35.3
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 5.4e-66 256.5 748 32.5
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 7.1e-66 256.1 725 33.2
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 2.1e-65 254.6 674 32.5
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.3e-64 251.9 586 35.3
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 3.3e-63 247.3 509 36.3
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 3.6e-62 243.8 485 39.4
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 1.1e-61 242.3 529 37.1
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.5e-60 236.9 441 36.7
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 3.8e-59 233.8 509 36.3
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 2.4e-58 231.1 729 29.1
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 5.4e-58 229.9 705 29.9
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 5.4e-58 229.9 705 29.8
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.2e-57 228.8 712 31.3
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 1.3e-56 225.3 550 34.2
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 2.3e-56 224.6 513 33.5
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.9e-56 223.8 707 33.0
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 4.3e-55 220.3 752 28.1
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 5.6e-55 219.9 720 30.3
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 7.4e-55 219.5 557 33.0
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 9.6e-55 219.2 729 30.9
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 6.2e-54 216.5 400 37.8
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 2.4e-53 214.5 511 36.2
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 9.0e-53 212.6 496 34.9
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 5.8e-52 209.9 737 31.3
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 2.9e-51 207.6 510 34.7
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 6.5e-51 206.5 551 33.6
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 6.0e-49 199.9 738 30.2
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.3e-48 198.7 371 38.5
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 3.0e-48 197.6 479 34.7
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 3.9e-48 197.2 427 37.5
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 6.7e-48 196.4 495 32.9
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 9.6e-47 192.6 495 33.9
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 3.7e-46 190.7 557 32.1
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 1.8e-45 188.3 498 34.3
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 1.5e-44 185.3 333 37.8
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.5e-44 183.7 247 44.5
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.1e-42 179.1 747 27.3
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.1e-41 174.9 253 44.7
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 2.7e-41 174.5 773 26.6
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 2.7e-41 174.5 690 29.0
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 4.6e-41 173.7 482 32.6
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.0e-40 172.6 495 30.9
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 1.8e-40 171.8 482 32.2
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 2.3e-40 171.4 666 29.0
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 6.7e-40 169.9 718 27.3
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 3.3e-39 167.5 597 28.3
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 1.3e-38 165.6 247 42.5
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 2.2e-38 164.9 764 25.5
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 3.7e-38 164.1 779 26.1
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 2.5e-34 151.4 638 29.3
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 1.1e-31 142.5 368 35.3
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 1.5e-31 142.1 689 25.7
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 3.7e-30 137.5 501 29.3
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 6.3e-30 136.7 231 41.1
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 4.5e-28 130.6 313 34.2
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.7e-27 128.6 396 29.5
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 5.5e-26 123.6 728 24.5
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 1.3e-22 112.5 101 53.5
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 7.0e-21 106.7 319 34.2
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 2.6e-20 104.8 305 29.8
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 3.8e-19 100.9 417 27.8
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 5.0e-19 100.5 190 37.4
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 8.5e-19 99.8 339 32.7
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.5e-18 99.0 369 31.7
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 2.5e-18 98.2 353 30.0
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 3.2e-18 97.8 322 30.4
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 3.2e-18 97.8 322 30.4
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 4.2e-18 97.4 351 28.5
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 4.2e-18 97.4 360 29.4
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 9.4e-18 96.3 287 31.4
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 9.4e-18 96.3 287 31.4
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 9.4e-18 96.3 215 33.5
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 2.7e-17 94.7 322 31.4
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 2.7e-17 94.7 517 24.8
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 4.7e-17 94.0 328 31.1
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 1.4e-16 92.4 332 29.8
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 1.4e-16 92.4 332 29.8
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 1.4e-16 92.4 332 29.8
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 5.2e-16 90.5 347 29.7
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 8.8e-16 89.7 332 30.4
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 1.5e-15 89.0 334 30.2
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 3.3e-15 87.8 215 31.2
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 4.4e-15 87.4 465 27.3
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 3.1e-13 81.3 232 28.9
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 2.7e-12 78.2 217 30.4
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 5.9e-12 77.0 56 66.1
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 8.0e-09 66.6 249 28.1
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 2.3e-08 65.1 160 30.6
Zm00001eb295010 Zea mays HOM05D024721 ORTHO05D025980 2.0e-07 62.0 396 23.7
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 3.4e-07 61.2 201 28.4
HPP92_020281 Vanilla planifolia HOM05D007001 ORTHO05D005587 1.7e-06 58.9 72 38.9
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 3.7e-06 57.8 292 24.7
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 8.3e-06 56.6 230 27.4


User provided reference genes

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