Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 1.3e-97 360.1 241 100.0
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 9.9e-74 280.8 226 76.5
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 1.1e-72 277.3 226 73.5
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 9.3e-72 274.2 226 73.0
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 1.0e-70 270.8 226 70.8
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 1.3e-70 270.4 226 65.0
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 2.3e-70 269.6 226 74.3
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 5.1e-70 268.5 226 73.9
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 6.6e-70 268.1 228 71.9
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 1.1e-69 267.3 226 74.8
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 1.9e-69 266.5 226 72.6
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 3.3e-69 265.8 226 77.0
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 4.3e-69 265.4 230 72.6
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 7.3e-69 264.6 226 73.5
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 2.8e-68 262.7 226 72.1
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 4.8e-68 261.9 226 71.7
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 3.1e-67 259.2 226 72.6
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 6.9e-67 258.1 226 76.5
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 6.9e-67 258.1 226 69.5
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 2.0e-66 256.5 226 75.7
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 3.4e-66 255.8 227 70.0
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 3.4e-66 255.8 226 69.0
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 4.4e-66 255.4 227 76.2
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 5.8e-66 255.0 227 70.0
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 7.6e-66 254.6 226 79.2
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 1.1e-64 250.8 226 72.1
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 1.1e-64 250.8 226 71.2
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 1.4e-64 250.4 228 71.1
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 2.4e-64 249.6 226 70.8
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.2e-64 249.2 226 70.8
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 4.2e-64 248.8 228 65.8
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 4.2e-64 248.8 222 71.2
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 2.7e-63 246.1 226 78.8
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.6e-63 245.4 226 68.6
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.6e-63 245.4 226 68.6
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 2.3e-62 243.0 226 69.5
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 8.7e-62 241.1 226 67.3
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 8.7e-62 241.1 226 66.4
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 1.1e-61 240.7 222 70.3
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 1.1e-61 240.7 226 71.2
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 5.6e-61 238.4 227 67.8
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.6e-60 236.9 225 68.9
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 8.1e-60 234.6 226 73.5
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 8.1e-60 234.6 222 70.7
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.8e-59 233.4 226 69.9
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.8e-59 233.4 226 71.2
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 6.9e-59 231.5 226 76.5
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 2.0e-58 229.9 232 62.1
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 2.6e-58 229.6 226 69.0
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 2.6e-58 229.6 226 64.6
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.4e-58 229.2 225 68.4
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 5.8e-58 228.4 225 65.3
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 7.6e-58 228.0 229 62.4
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 7.6e-58 228.0 256 67.6
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 9.9e-58 227.6 227 65.2
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 2.2e-57 226.5 226 67.3
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 2.2e-57 226.5 226 68.6
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 6.4e-57 224.9 227 74.0
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 1.1e-56 224.2 226 65.9
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 5.5e-56 221.9 227 65.6
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 1.2e-55 220.7 246 62.2
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 2.1e-55 219.9 226 67.3
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 4.6e-55 218.8 227 71.4
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 7.9e-55 218.0 226 71.2
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.8e-54 216.9 226 62.8
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 2.3e-54 216.5 234 70.5
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 5.1e-54 215.3 222 64.4
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 8.7e-54 214.5 246 60.6
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.9e-53 213.4 229 70.7
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 2.5e-53 213.0 227 66.1
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 4.3e-53 212.2 226 65.0
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 7.4e-53 211.5 226 64.6
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.3e-52 210.7 223 53.4
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 1.6e-52 210.3 227 64.8
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 2.1e-52 209.9 222 64.0
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 1.1e-51 207.6 227 56.8
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 1.8e-51 206.8 226 63.7
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.8e-51 206.8 226 62.4
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 3.1e-51 206.1 226 62.8
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 4.0e-51 205.7 227 65.2
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 3.4e-50 202.6 226 62.8
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 1.0e-49 201.1 227 63.0
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.3e-49 200.7 228 63.2
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.3e-49 200.7 228 64.0
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 1.7e-49 200.3 226 66.4
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 2.9e-49 199.5 227 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 3.8e-49 199.1 230 63.0
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 4.9e-49 198.7 230 63.9
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 8.4e-49 198.0 227 61.2
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 1.1e-48 197.6 226 60.2
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.4e-48 197.2 227 53.3
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 7.1e-48 194.9 137 73.7
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 1.2e-47 194.1 227 59.0
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 3.5e-47 192.6 226 67.7
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 6.0e-47 191.8 227 57.3
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 1.8e-46 190.3 227 68.3
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 1.8e-46 190.3 226 70.4
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 1.8e-46 190.3 229 48.9
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 2.3e-46 189.9 329 47.7
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 3.9e-46 189.1 227 66.1
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 5.1e-46 188.7 226 68.1
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 5.1e-46 188.7 226 61.5
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 6.7e-46 188.3 226 66.4
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 7.4e-45 184.9 226 60.2
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.3e-44 184.1 225 60.4
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 6.3e-44 181.8 226 65.0
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 1.7e-41 173.7 226 62.4
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.9e-40 170.2 225 58.2
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 2.5e-40 169.9 225 58.7
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 2.5e-40 169.9 225 58.7
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 3.2e-40 169.5 225 58.7
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 2.7e-39 166.4 226 54.9
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.7e-39 166.4 228 45.6
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.5e-37 160.6 95 80.0
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 7.4e-37 158.3 227 58.6
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 1.5e-34 150.6 188 59.6
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 5.9e-34 148.7 211 56.9
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.8e-27 127.1 226 44.2
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 4.1e-27 125.9 76 80.3
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 1.5e-26 124.0 62 90.3
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 2.6e-26 123.2 95 66.3
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.1e-24 117.9 228 39.0
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 4.2e-24 115.9 68 80.9
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.3e-22 110.2 228 39.0
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 1.8e-19 100.5 219 44.3
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 7.0e-19 98.6 229 34.1
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 1.7e-17 94.0 223 36.8
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 1.4e-11 74.3 126 38.9
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 1.6e-10 70.9 80 52.5
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 1.7e-09 67.4 40 77.5
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 6.8e-06 55.5 54 53.7


User provided reference genes

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