Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 9.5e-141 503.4 245 100.0
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 2.6e-106 389.0 239 77.4
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.5e-106 388.3 244 75.0
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 3.8e-105 385.2 239 77.0
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 4.2e-104 381.7 238 78.2
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 4.2e-104 381.7 227 77.5
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 1.0e-102 377.1 245 73.9
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 8.7e-102 374.0 229 76.4
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 7.4e-101 370.9 222 78.8
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 9.6e-101 370.5 229 77.7
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 1.3e-100 370.2 240 72.5
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 2.1e-100 369.4 239 75.7
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 6.3e-100 367.9 220 77.7
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 1.4e-99 366.7 243 71.6
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 1.8e-99 366.3 225 76.0
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 3.1e-99 365.5 216 78.7
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 5.3e-99 364.8 229 76.4
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 1.2e-98 363.6 240 70.8
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 1.5e-98 363.2 239 69.5
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.0e-98 362.8 226 73.9
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.3e-97 360.1 221 76.0
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 2.2e-97 359.4 228 73.7
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 2.9e-97 359.0 225 73.3
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 3.8e-97 358.6 225 73.3
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 1.9e-96 356.3 218 76.6
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.9e-96 356.3 225 73.8
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 1.9e-96 356.3 223 74.0
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 1.9e-96 356.3 223 74.0
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 1.9e-96 356.3 239 70.3
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 1.9e-96 356.3 223 73.5
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 4.2e-96 355.1 217 77.4
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 4.2e-96 355.1 222 74.3
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.2e-95 353.6 219 74.0
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 1.6e-95 353.2 220 74.5
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 1.6e-95 353.2 221 75.1
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 2.7e-95 352.4 239 69.5
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.7e-95 352.4 221 74.2
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 3.6e-95 352.1 195 81.5
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 3.6e-95 352.1 218 75.2
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.3e-94 350.1 219 73.1
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 2.3e-94 349.4 224 74.1
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 3.9e-94 348.6 219 72.1
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 3.9e-94 348.6 221 74.2
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 5.1e-94 348.2 240 69.2
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 1.9e-93 346.3 224 71.4
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 2.5e-93 345.9 219 73.5
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 3.3e-93 345.5 216 73.6
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 3.3e-93 345.5 219 73.1
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 3.3e-93 345.5 225 68.9
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 7.4e-93 344.4 238 68.1
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 7.4e-93 344.4 238 68.1
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 9.7e-93 344.0 219 73.5
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 9.7e-93 344.0 223 70.4
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.6e-92 343.2 240 69.2
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 2.2e-92 342.8 245 65.3
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 3.7e-92 342.0 223 70.0
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 6.3e-92 341.3 234 68.4
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 8.2e-92 340.9 220 72.3
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.4e-91 339.3 238 67.2
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 3.1e-91 339.0 227 70.0
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.1e-91 338.6 238 67.6
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 5.3e-91 338.2 238 67.2
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 5.3e-91 338.2 225 67.6
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 5.3e-91 338.2 217 71.9
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 6.9e-91 337.8 234 68.8
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 2.0e-90 336.3 220 70.5
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 2.0e-90 336.3 216 73.6
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 2.6e-90 335.9 223 70.0
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 2.6e-90 335.9 221 71.5
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 4.5e-90 335.1 238 66.4
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 4.5e-90 335.1 220 71.4
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.7e-89 333.2 222 71.6
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 5.0e-89 331.6 223 67.7
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 6.5e-89 331.3 223 72.2
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.4e-88 330.1 220 70.5
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 2.5e-88 329.3 224 66.5
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 2.5e-88 329.3 231 68.8
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 4.2e-88 328.6 224 66.5
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 4.2e-88 328.6 237 67.5
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 4.2e-88 328.6 223 66.8
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 4.2e-88 328.6 220 70.5
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 5.5e-88 328.2 254 64.6
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 5.5e-88 328.2 221 70.1
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 7.2e-88 327.8 236 65.3
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 9.4e-88 327.4 219 68.5
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 9.4e-88 327.4 218 72.5
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 1.2e-87 327.0 219 68.0
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.2e-87 327.0 212 72.2
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 1.2e-87 327.0 204 73.0
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 1.6e-87 326.6 219 68.9
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 2.7e-87 325.9 215 69.3
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 2.7e-87 325.9 215 70.2
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 7.9e-87 324.3 207 72.0
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 1.8e-86 323.2 214 69.6
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 1.8e-86 323.2 214 69.6
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.8e-86 323.2 248 62.9
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 3.0e-86 322.4 225 65.8
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 5.1e-86 321.6 214 69.2
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 1.5e-85 320.1 211 70.6
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.5e-85 320.1 214 70.1
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 3.3e-85 318.9 220 68.6
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 2.2e-84 316.2 229 65.1
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 9.1e-83 310.8 305 52.5
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 1.5e-82 310.1 227 64.3
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 5.0e-81 305.1 220 65.5
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 2.5e-80 302.8 362 46.4
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.2e-80 302.0 226 65.5
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 2.3e-78 296.2 236 62.3
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 8.8e-78 294.3 214 65.0
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.5e-72 276.2 201 66.2
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 4.2e-72 275.4 184 70.1
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.0e-70 269.2 237 57.8
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 7.5e-69 264.6 224 60.7
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 1.1e-67 260.8 207 59.9
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.4e-67 259.6 194 63.9
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 2.9e-65 252.7 180 63.9
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 4.0e-62 242.3 223 57.0
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.6e-61 239.6 220 55.9
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 2.6e-61 239.6 123 82.1
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 3.5e-58 229.2 220 54.1
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 4.5e-58 228.8 221 53.4
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 3.8e-57 225.7 162 61.1
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 5.0e-57 225.3 165 66.7
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 6.5e-57 224.9 257 49.4
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 1.6e-55 220.3 131 73.3
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.8e-55 219.5 168 63.1
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 6.1e-55 218.4 153 69.9
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.4e-53 212.6 124 74.2
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.5e-50 202.2 134 68.7
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 7.5e-45 184.9 190 54.2
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 5.9e-42 175.3 133 60.9
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 1.7e-41 173.7 126 58.7
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 8.6e-33 144.8 199 37.7
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 9.5e-32 141.4 99 63.6
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 4.0e-30 136.0 88 68.2
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.3e-24 115.9 132 49.2
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 9.9e-13 78.2 98 48.0
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.6e-10 70.9 87 49.4
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 6.6e-09 65.5 32 84.4
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 1.9e-08 63.9 74 50.0
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 4.8e-07 59.3 81 45.7


User provided reference genes

Program Settings