Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 0.0e+00 1120.1 559 100.0
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 3.0e-230 802.0 554 71.7
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 2.3e-222 775.8 551 71.5
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 1.2e-218 763.5 556 67.3
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 3.0e-214 748.8 557 67.7
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 4.4e-210 734.9 562 66.4
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.7e-209 733.0 532 69.0
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 3.2e-208 728.8 555 66.1
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 5.4e-208 728.0 582 62.4
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.3e-206 723.4 557 65.2
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.2e-202 710.3 509 70.5
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 1.1e-200 703.7 539 65.7
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 1.1e-200 703.7 552 63.4
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 1.9e-200 703.0 552 65.4
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.9e-200 703.0 527 66.2
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 2.4e-200 702.6 493 70.4
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 4.2e-200 701.8 555 62.3
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 9.3e-200 700.7 521 66.2
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 2.1e-199 699.5 506 67.0
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 6.0e-199 698.0 529 64.8
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 2.3e-198 696.0 552 64.1
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 3.0e-198 695.7 548 63.9
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.1e-197 693.7 504 67.1
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 1.9e-197 693.0 498 67.3
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 3.3e-197 692.2 496 68.1
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 4.3e-197 691.8 496 68.3
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.3e-196 690.3 491 67.4
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 3.7e-196 688.7 512 66.8
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 6.2e-196 688.0 496 67.9
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 6.2e-196 688.0 496 66.7
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 4.0e-195 685.3 518 65.3
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 2.6e-194 682.6 509 66.2
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 3.4e-194 682.2 554 61.0
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 4.5e-194 681.8 495 65.7
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 7.6e-194 681.0 476 71.4
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 9.9e-194 680.6 554 61.2
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 2.2e-193 679.5 554 61.0
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 2.9e-193 679.1 496 66.1
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 6.4e-193 677.9 501 65.9
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 8.4e-193 677.6 485 69.9
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 8.4e-193 677.6 485 70.1
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 3.2e-192 675.6 545 61.3
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 3.2e-192 675.6 503 65.2
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 3.2e-192 675.6 534 62.4
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 7.1e-192 674.5 549 61.7
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.3e-192 674.1 557 63.2
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.2e-191 673.7 539 63.6
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 1.6e-191 673.3 551 60.6
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 2.7e-191 672.5 472 69.3
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 6.0e-191 671.4 552 60.7
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.3e-190 670.2 512 64.8
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 2.3e-190 669.5 493 67.1
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 2.3e-190 669.5 484 68.0
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 8.7e-190 667.5 485 68.9
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.3e-189 665.6 485 67.2
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 4.3e-189 665.2 498 66.7
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 1.3e-188 663.7 554 59.9
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.8e-188 662.5 585 57.3
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 6.2e-188 661.4 545 60.2
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 5.3e-187 658.3 547 61.1
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 6.9e-187 657.9 486 66.3
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 4.5e-186 655.2 549 61.9
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.0e-185 654.1 532 62.0
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 2.9e-185 652.5 553 60.8
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 3.8e-185 652.1 483 65.8
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.5e-184 649.4 519 62.2
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 1.2e-183 647.1 519 61.7
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 3.5e-183 645.6 529 60.7
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.1e-181 640.6 485 65.4
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 1.9e-181 639.8 534 62.0
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.5e-181 639.4 524 61.1
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 7.4e-181 637.9 486 63.2
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 4.1e-179 632.1 495 63.8
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 4.1e-179 632.1 486 61.9
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.5e-178 630.2 486 63.2
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.2e-175 620.5 485 61.4
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 4.6e-175 618.6 453 69.1
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.7e-172 610.1 582 55.0
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 8.2e-172 607.8 484 62.6
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.1e-171 607.4 551 56.6
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 1.4e-171 607.1 484 61.6
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.4e-168 597.0 542 59.4
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 7.2e-168 594.7 526 56.8
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.6e-167 593.6 505 58.6
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 2.1e-167 593.2 417 69.3
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 4.7e-167 592.0 521 56.6
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 6.1e-167 591.7 525 59.4
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.4e-163 580.5 533 55.7
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.0e-161 574.3 506 58.3
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 1.7e-161 573.5 545 54.5
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 3.8e-161 572.4 506 58.9
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.5e-160 569.7 504 58.7
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 9.4e-160 567.8 526 55.1
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.4e-158 563.9 424 67.9
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 3.9e-158 562.4 488 58.8
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.7e-158 561.6 493 56.8
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 3.3e-157 559.3 517 56.3
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-150 537.0 497 55.5
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 5.2e-150 535.4 525 56.2
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.5e-149 533.9 452 57.5
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 3.3e-149 532.7 545 51.9
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 2.4e-147 526.6 489 55.2
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.2e-145 520.0 537 54.4
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.9e-144 516.9 525 53.0
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.3e-140 504.2 510 51.0
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.7e-140 503.8 493 54.2
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 7.0e-139 498.4 558 48.0
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 5.9e-138 495.4 454 57.5
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 1.1e-136 491.1 503 49.7
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 1.6e-135 487.3 444 56.3
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 2.1e-135 486.9 488 52.7
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 6.8e-134 481.9 502 53.2
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 4.9e-132 475.7 342 68.1
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 6.3e-132 475.3 479 53.4
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 1.1e-131 474.6 391 58.8
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 4.1e-131 472.6 396 60.4
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.5e-125 454.1 330 66.1
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.5e-120 436.8 329 65.0
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 7.3e-120 435.3 332 65.7
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.4e-118 431.0 458 51.7
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 6.4e-116 422.2 324 63.6
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.2e-115 419.9 290 70.3
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 4.3e-112 409.5 397 55.9
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 8.9e-110 401.7 633 37.9
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.9e-105 386.3 340 57.1
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.4e-102 377.1 309 60.2
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 3.4e-101 373.2 442 48.2
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.4e-101 373.2 340 57.6
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.7e-100 370.9 411 49.4
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.1e-83 315.1 238 62.2
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.1e-83 312.4 275 56.4
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 3.0e-81 307.0 454 40.5
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.8e-78 297.7 228 60.5
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 4.0e-78 296.6 193 76.7
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.0e-74 282.7 345 44.6
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 7.6e-69 265.8 596 31.5
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 1.3e-68 265.0 158 81.0
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 8.4e-68 262.3 470 37.2
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 4.6e-66 256.5 258 53.9
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.9e-65 253.4 213 57.7
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 6.7e-65 252.7 213 57.7
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 4.3e-64 250.0 158 71.5
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 2.8e-63 247.3 150 79.3
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 4.1e-62 243.4 169 67.5
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 7.9e-58 229.2 184 65.2
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.3e-55 219.5 194 55.2
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 2.1e-50 204.5 146 65.1
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 6.7e-49 199.5 189 57.1
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.1e-46 189.1 147 61.9
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.1e-42 176.4 130 65.4
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.9e-41 173.7 168 50.0
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 9.7e-40 169.1 208 43.3
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.2e-39 167.9 118 66.9
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.0e-36 159.1 143 60.1
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.8e-36 157.1 199 45.7
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.7e-34 151.0 107 65.4
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 4.0e-25 120.6 76 72.4
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.0e-20 103.6 125 41.6
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 2.0e-16 91.7 97 48.5
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 5.0e-12 77.0 63 63.5
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 6.6e-12 76.6 72 54.2
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 3.3e-11 74.3 72 55.6


User provided reference genes

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