Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.3e-276 955.7 469 100.0
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 5.4e-201 704.5 464 72.8
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 9.2e-201 703.7 476 72.9
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.9e-199 698.4 462 73.2
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 6.6e-199 697.6 465 72.9
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 9.5e-198 693.7 465 71.6
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 1.1e-196 690.3 468 71.6
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 2.3e-196 689.1 468 72.0
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 5.8e-195 684.5 465 71.0
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 4.1e-193 678.3 463 71.5
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 7.8e-192 674.1 465 71.2
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.9e-191 671.8 467 70.0
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.9e-191 671.8 465 69.5
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.2e-189 666.8 469 68.9
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.1e-188 663.7 470 68.7
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 3.1e-188 662.1 436 72.5
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 4.0e-188 661.8 462 69.9
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.7e-186 656.4 465 69.2
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 2.2e-186 656.0 463 69.1
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 2.2e-186 656.0 466 66.5
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.2e-186 656.0 467 68.5
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 8.4e-186 654.1 465 68.4
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 8.4e-186 654.1 464 68.5
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 3.2e-185 652.1 463 68.5
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 5.4e-185 651.4 463 69.5
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.2e-184 650.2 466 67.4
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 3.5e-184 648.7 419 74.0
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 7.8e-184 647.5 463 68.0
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 1.7e-183 646.4 464 67.5
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.1e-182 643.7 437 70.5
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.1e-182 643.7 465 67.5
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.5e-182 642.5 466 66.3
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 7.3e-182 641.0 466 66.1
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.8e-181 639.0 466 65.9
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 6.2e-181 637.9 469 68.7
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 8.1e-181 637.5 468 68.2
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 4.0e-180 635.2 468 66.0
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.3e-178 630.2 466 66.1
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 2.2e-178 629.4 469 65.2
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 2.9e-178 629.0 413 73.6
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 6.4e-178 627.9 468 65.8
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.1e-177 627.1 484 64.5
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 4.2e-177 625.2 450 67.6
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 5.4e-177 624.8 463 65.2
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.6e-176 623.2 468 64.5
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.6e-176 621.7 469 65.0
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 2.3e-175 619.4 467 63.6
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.0e-175 619.0 467 64.2
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.9e-175 618.6 468 64.3
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 9.6e-174 614.0 463 63.9
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 2.1e-173 612.8 469 64.2
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 6.2e-173 611.3 463 65.7
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 4.0e-172 608.6 473 63.0
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 9.0e-172 607.4 469 62.7
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 1.2e-171 607.1 465 64.3
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.5e-171 606.7 465 62.2
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 7.6e-171 604.4 468 63.2
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 9.9e-171 604.0 463 62.9
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 3.8e-170 602.1 469 63.1
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 4.9e-170 601.7 452 65.3
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 6.4e-170 601.3 464 63.4
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 8.4e-170 600.9 469 61.2
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 1.4e-169 600.1 468 61.5
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 1.4e-169 600.1 468 61.3
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 2.4e-169 599.4 465 62.8
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 3.2e-169 599.0 469 61.2
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 7.1e-169 597.8 468 62.8
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-168 597.0 468 62.6
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 1.6e-168 596.7 467 62.5
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 3.5e-168 595.5 470 62.6
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 4.6e-168 595.1 469 63.3
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.0e-167 594.0 468 61.1
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.3e-167 593.6 463 61.8
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-167 593.2 468 62.2
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-167 593.2 468 62.2
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-167 593.2 468 62.2
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 3.3e-166 589.0 439 65.4
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 1.3e-165 587.0 464 61.4
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 3.7e-165 585.5 467 61.9
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 6.2e-165 584.7 464 61.6
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 8.1e-165 584.3 464 61.2
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.2e-163 580.5 467 60.4
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 5.8e-163 578.2 468 61.1
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 7.6e-163 577.8 468 60.7
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 2.2e-162 576.2 463 62.0
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 9.3e-161 570.9 435 65.7
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 3.9e-159 565.5 459 58.0
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 9.6e-158 560.8 459 60.3
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 9.6e-158 560.8 468 59.6
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 1.6e-157 560.1 459 60.3
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 2.8e-157 559.3 459 60.3
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 4.8e-157 558.5 459 59.5
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 4.8e-157 558.5 466 58.4
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 8.4e-154 547.7 459 59.3
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.6e-152 543.5 465 55.5
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-151 540.0 468 57.5
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 3.0e-151 539.3 443 59.6
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 6.7e-151 538.1 435 60.9
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 1.9e-150 536.6 508 56.9
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-148 529.6 431 59.9
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 5.9e-147 525.0 339 74.9
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 5.5e-145 518.5 468 56.4
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-144 517.3 484 55.4
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-144 517.3 445 57.8
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 3.6e-144 515.8 437 58.6
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 7.9e-144 514.6 436 57.3
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 7.9e-144 514.6 469 56.9
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 8.8e-143 511.1 467 54.4
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 7.4e-142 508.1 481 56.8
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.3e-141 507.3 495 53.3
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.2e-139 500.7 470 54.7
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 1.7e-138 496.9 456 51.8
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 3.8e-138 495.7 461 53.1
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.1e-136 490.0 467 55.9
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 5.1e-135 485.3 388 61.1
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 9.7e-134 481.1 420 56.9
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 2.3e-127 459.9 435 56.3
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 9.7e-126 454.5 352 61.1
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 6.3e-125 451.8 446 53.8
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.4e-124 449.9 364 60.2
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.7e-112 409.8 503 45.7
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.0e-95 354.8 465 42.8
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 1.9e-84 317.4 424 41.3
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 2.4e-84 317.0 254 65.0
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 2.7e-83 313.5 432 40.3
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.6e-74 282.3 190 70.0
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.2e-72 278.1 271 51.3
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 2.4e-71 273.9 197 70.6
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 4.0e-71 273.1 197 70.6
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.7e-67 260.4 197 64.5
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 4.8e-64 249.6 225 56.0
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.9e-52 211.1 145 67.6
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 7.1e-52 209.1 379 38.0
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-50 205.3 225 50.2
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 3.7e-48 196.8 222 49.5
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 9.3e-44 182.2 316 37.3
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.3e-40 171.8 274 38.3
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 8.4e-37 159.1 110 64.5
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 6.9e-31 139.4 179 45.8
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 1.5e-30 138.3 193 39.9
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 8.5e-29 132.5 98 64.3
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 1.1e-28 132.1 132 52.3
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 2.5e-28 131.0 213 39.4
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.5e-28 129.8 114 60.5
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 7.9e-27 125.9 177 44.1
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 5.7e-25 119.8 115 54.8
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 2.8e-24 117.5 94 67.0
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 3.7e-24 117.1 213 38.5
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 9.1e-23 112.5 144 44.4
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 2.0e-22 111.3 80 70.0
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 7.7e-22 109.4 77 63.6
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 7.7e-22 109.4 144 42.4
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 1.7e-21 108.2 77 63.6
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 6.5e-21 106.3 82 67.1
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 3.2e-20 104.0 102 53.9
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-18 98.2 129 41.9
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 5.1e-18 96.7 74 58.1
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 8.8e-18 95.9 216 36.1
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.5e-17 95.1 54 68.5
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 4.8e-16 90.1 118 42.4
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.6e-14 84.3 56 67.9
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 4.5e-14 83.6 56 67.9
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 5.0e-13 80.1 115 40.0
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 6.1e-11 73.2 189 28.0
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 6.1e-11 73.2 178 28.1
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 8.8e-10 69.3 177 27.7
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 2.6e-09 67.8 53 58.5
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 1.3e-08 65.5 57 50.9
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 3.1e-07 60.8 53 50.9


User provided reference genes

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