Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 2.2e-70 268.9 136 100.0
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.7e-59 232.6 126 93.7
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 5.3e-48 194.5 126 74.6
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 1.4e-45 186.4 126 74.6
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 3.2e-45 185.3 119 74.8
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 7.1e-45 184.1 122 75.4
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 2.7e-44 182.2 126 71.4
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 2.7e-44 182.2 127 70.1
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 2.7e-44 182.2 128 68.0
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 3.5e-44 181.8 123 72.4
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 4.6e-44 181.4 127 70.1
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 4.6e-44 181.4 126 71.4
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 4.6e-44 181.4 127 69.3
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 7.9e-44 180.6 126 67.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 7.9e-44 180.6 127 67.7
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 1.0e-43 180.3 118 72.9
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.0e-43 180.3 127 66.9
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.0e-43 180.3 126 71.4
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.3e-43 179.9 124 71.0
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.8e-43 179.5 125 71.2
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.8e-43 179.5 127 68.5
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.0e-43 178.7 118 72.9
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 5.1e-43 177.9 126 69.8
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 6.7e-43 177.6 126 69.0
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 6.7e-43 177.6 126 69.8
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 8.7e-43 177.2 127 68.5
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.1e-42 176.8 124 68.5
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.1e-42 176.8 127 66.9
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.9e-42 176.0 124 68.5
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.9e-42 176.0 127 66.9
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 1.9e-42 176.0 125 68.0
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.5e-42 175.6 126 69.0
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.3e-42 174.9 126 64.3
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 4.3e-42 174.9 131 67.2
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 7.4e-42 174.1 124 69.4
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 1.3e-41 173.3 124 68.5
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 2.1e-41 172.6 124 65.3
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 4.8e-41 171.4 127 66.1
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.8e-41 171.4 124 63.7
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 6.2e-41 171.0 125 65.6
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 6.2e-41 171.0 124 66.1
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 8.1e-41 170.6 127 63.0
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.4e-40 169.9 126 65.1
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.8e-40 169.5 120 63.3
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 1.8e-40 169.5 120 70.0
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 1.8e-40 169.5 127 64.6
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.8e-40 169.5 118 70.3
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 2.4e-40 169.1 118 66.9
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 2.4e-40 169.1 126 63.5
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 3.1e-40 168.7 126 65.9
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 5.3e-40 167.9 118 67.8
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 6.9e-40 167.5 127 64.6
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 9.0e-40 167.2 126 65.1
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 9.0e-40 167.2 126 62.7
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.2e-39 166.8 128 63.3
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.2e-39 166.8 124 63.7
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.2e-39 166.8 118 65.3
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 1.2e-39 166.8 124 65.3
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.5e-39 166.4 118 66.9
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 4.5e-39 164.9 118 65.3
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 4.5e-39 164.9 118 64.4
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 5.8e-39 164.5 112 67.9
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 7.6e-39 164.1 120 65.8
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 1.7e-38 162.9 124 64.5
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.7e-38 162.9 125 64.0
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.7e-38 162.9 144 59.0
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 2.2e-38 162.5 118 64.4
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 3.8e-38 161.8 124 62.9
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 3.8e-38 161.8 123 66.7
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 4.9e-38 161.4 124 64.5
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.1e-37 160.2 124 61.3
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 3.2e-37 158.7 118 63.6
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 4.2e-37 158.3 117 65.8
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 4.2e-37 158.3 118 65.3
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 9.3e-37 157.1 124 64.5
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 2.7e-36 155.6 120 65.8
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 2.7e-36 155.6 120 65.8
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.7e-36 155.6 122 59.0
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.5e-36 155.2 126 58.7
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 6.0e-36 154.5 122 60.7
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 7.9e-36 154.1 126 62.7
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.3e-35 153.3 123 59.3
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 3.0e-35 152.1 157 51.6
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 3.9e-35 151.8 120 65.0
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 5.1e-35 151.4 112 62.5
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 6.7e-35 151.0 123 57.7
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 6.7e-35 151.0 110 65.5
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 6.7e-35 151.0 123 61.0
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.1e-34 150.2 157 51.0
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-34 150.2 120 62.5
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.5e-34 149.8 123 60.2
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.5e-34 149.8 123 60.2
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.5e-34 149.8 123 58.5
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 1.5e-34 149.8 147 54.4
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.9e-34 149.4 120 64.2
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.9e-34 149.4 120 64.2
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 2.5e-34 149.1 120 61.7
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.5e-34 149.1 120 61.7
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 3.3e-34 148.7 123 60.2
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 4.3e-34 148.3 123 59.3
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 4.3e-34 148.3 123 59.3
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 4.3e-34 148.3 123 59.3
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 4.3e-34 148.3 117 61.5
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 4.3e-34 148.3 123 59.3
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.3e-34 148.3 123 59.3
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 4.3e-34 148.3 123 59.3
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 5.6e-34 147.9 122 59.8
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.3e-33 146.7 123 58.5
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.3e-33 146.7 122 57.4
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 2.1e-33 146.0 121 60.3
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.8e-33 145.6 125 57.6
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.8e-33 145.6 126 57.1
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.7e-33 145.2 123 60.2
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.7e-33 145.2 127 59.8
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 8.2e-33 144.1 120 60.0
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 8.2e-33 144.1 123 56.1
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.1e-32 143.7 120 60.0
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.8e-32 142.9 122 59.0
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.4e-32 142.5 134 54.5
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 9.0e-32 140.6 154 48.7
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.2e-31 140.2 120 59.2
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.2e-31 140.2 120 60.0
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.5e-31 139.8 126 57.1
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 2.6e-31 139.0 120 59.2
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 3.4e-31 138.7 120 59.2
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.4e-31 138.7 120 59.2
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 4.5e-31 138.3 123 56.1
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 4.5e-31 138.3 116 57.8
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.5e-31 138.3 117 60.7
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.7e-30 136.3 117 59.0
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 2.2e-30 136.0 97 64.9
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 2.2e-30 136.0 123 57.7
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.4e-29 133.3 124 50.8
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 4.2e-29 131.7 142 52.1
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 7.1e-29 131.0 123 54.5
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.6e-28 129.8 122 54.9
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.5e-28 128.6 117 55.6
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.3e-27 126.7 147 49.0
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 6.7e-27 124.4 89 66.3
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 8.7e-27 124.0 151 47.7
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.4e-24 116.7 83 66.3
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.8e-24 116.3 124 50.8
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.5e-23 111.7 76 65.8
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.2e-22 109.4 115 49.6
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 8.8e-19 97.4 91 52.7
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.5e-18 96.7 115 46.1
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.2e-17 92.8 93 51.6
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.4e-16 90.1 61 72.1
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.2e-15 87.0 52 78.8
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.5e-15 86.7 52 78.8
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 2.0e-15 86.3 91 50.5
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 3.4e-15 85.5 65 66.2
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.9e-15 84.7 99 48.5
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.4e-13 80.1 113 41.6
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 6.3e-09 64.7 49 57.1
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 8.2e-09 64.3 122 36.1
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.6e-07 59.3 58 48.3
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 8.5e-06 54.3 42 69.0


User provided reference genes

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