Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 2.0e-45 186.4 188 100.0
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 1.1e-14 84.3 53 60.4
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 5.3e-14 82.0 53 64.2
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 5.3e-14 82.0 54 61.1
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 9.0e-14 81.3 53 60.4
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.2e-13 80.9 54 59.3
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.2e-13 80.9 54 59.3
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 2.0e-13 80.1 54 57.4
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 5.8e-13 78.6 54 55.6
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 3.8e-12 75.9 49 65.3
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 4.9e-12 75.5 60 53.3
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 6.4e-12 75.1 56 51.8
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 6.4e-12 75.1 46 65.2
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 8.4e-12 74.7 60 55.0
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.1e-11 74.3 58 48.3
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 1.1e-11 74.3 58 50.0
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.1e-11 74.3 48 60.4
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 1.4e-11 73.9 46 63.0
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.4e-11 73.9 51 58.8
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 1.4e-11 73.9 53 56.6
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.4e-11 73.9 47 63.8
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 1.4e-11 73.9 47 61.7
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 1.9e-11 73.6 60 50.0
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 1.9e-11 73.6 45 66.7
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 2.4e-11 73.2 46 60.9
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 3.2e-11 72.8 49 59.2
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 4.2e-11 72.4 57 50.9
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 4.2e-11 72.4 57 50.9
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 4.2e-11 72.4 58 46.6
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 4.2e-11 72.4 57 50.9
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 4.2e-11 72.4 58 46.6
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 4.2e-11 72.4 57 50.9
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 4.2e-11 72.4 58 46.6
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 4.2e-11 72.4 49 55.1
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.2e-11 72.4 49 57.1
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 4.2e-11 72.4 47 61.7
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 4.2e-11 72.4 50 58.0
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 5.4e-11 72.0 51 58.8
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 5.4e-11 72.0 53 52.8
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 5.4e-11 72.0 53 52.8
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 5.4e-11 72.0 57 49.1
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 5.4e-11 72.0 51 51.0
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 5.4e-11 72.0 55 49.1
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 5.4e-11 72.0 49 57.1
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 5.4e-11 72.0 58 48.3
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 7.1e-11 71.6 57 52.6
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 7.1e-11 71.6 48 56.2
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 7.1e-11 71.6 58 46.6
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 9.3e-11 71.2 53 50.9
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 9.3e-11 71.2 53 50.9
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 9.3e-11 71.2 53 50.9
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 9.3e-11 71.2 45 62.2
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 9.3e-11 71.2 49 59.2
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 9.3e-11 71.2 55 47.3
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.2e-10 70.9 56 46.4
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 1.6e-10 70.5 58 44.8
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 1.6e-10 70.5 58 44.8
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 2.1e-10 70.1 53 50.9
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 2.1e-10 70.1 48 58.3
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.7e-10 69.7 46 63.0
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.5e-10 69.3 53 52.8
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 3.5e-10 69.3 49 55.1
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 3.5e-10 69.3 49 55.1
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 3.5e-10 69.3 57 49.1
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 3.5e-10 69.3 49 53.1
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.6e-10 68.9 53 52.8
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 6.0e-10 68.6 51 52.9
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 7.9e-10 68.2 46 58.7
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 7.9e-10 68.2 49 53.1
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.0e-09 67.8 46 54.3
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 1.0e-09 67.8 48 56.2
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-09 67.4 46 58.7
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.3e-09 67.4 50 54.0
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.8e-09 67.0 46 56.5
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.8e-09 67.0 46 56.5
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.8e-09 67.0 47 57.4
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 2.3e-09 66.6 49 49.0
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 3.0e-09 66.2 53 49.1
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 3.0e-09 66.2 46 54.3
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 3.0e-09 66.2 46 54.3
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 3.0e-09 66.2 50 50.0
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 3.0e-09 66.2 49 53.1
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 3.0e-09 66.2 45 55.6
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 3.9e-09 65.9 47 57.4
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.9e-09 65.9 46 54.3
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 3.9e-09 65.9 50 50.0
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 5.1e-09 65.5 49 51.0
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 5.1e-09 65.5 49 46.9
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 5.1e-09 65.5 46 52.2
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 5.1e-09 65.5 52 46.2
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 5.1e-09 65.5 49 51.0
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 5.1e-09 65.5 46 56.5
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 6.7e-09 65.1 52 46.2
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 6.7e-09 65.1 49 51.0
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 6.7e-09 65.1 49 49.0
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 6.7e-09 65.1 50 52.0
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 6.7e-09 65.1 46 58.7
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 6.7e-09 65.1 53 49.1
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 8.7e-09 64.7 47 51.1
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 1.1e-08 64.3 50 48.0
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 1.1e-08 64.3 49 44.9
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 1.1e-08 64.3 52 48.1
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-08 64.3 48 52.1
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-08 64.3 48 52.1
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-08 64.3 48 52.1
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-08 64.3 48 52.1
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.1e-08 64.3 49 51.0
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 1.1e-08 64.3 56 44.6
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 1.5e-08 63.9 48 50.0
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 3.3e-08 62.8 51 45.1
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 3.3e-08 62.8 53 47.2
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 3.3e-08 62.8 53 47.2
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 4.3e-08 62.4 46 56.5
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 7.4e-08 61.6 56 50.0
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 9.6e-08 61.2 45 53.3
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 9.6e-08 61.2 52 46.2
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 9.6e-08 61.2 48 50.0
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 9.6e-08 61.2 48 50.0
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 1.3e-07 60.8 49 49.0
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.3e-07 60.8 51 45.1
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 1.3e-07 60.8 50 42.0
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 1.6e-07 60.5 49 51.0
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 1.6e-07 60.5 45 51.1
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.6e-07 60.5 45 51.1
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 2.8e-07 59.7 49 42.9
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 2.8e-07 59.7 46 52.2
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 4.8e-07 58.9 46 47.8
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 4.8e-07 58.9 47 51.1
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 6.2e-07 58.5 45 51.1
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 8.1e-07 58.2 45 48.9
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 1.1e-06 57.8 47 48.9
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.1e-06 57.8 48 47.9
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.4e-06 57.4 48 45.8
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.4e-06 57.4 46 50.0
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.4e-06 57.4 46 50.0
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.4e-06 57.4 47 48.9
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 1.8e-06 57.0 45 46.7
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.8e-06 57.0 45 46.7
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.8e-06 57.0 45 46.7
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.4e-06 56.6 45 46.7
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.4e-06 56.6 45 46.7
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 2.4e-06 56.6 47 46.8
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.3e-06 55.5 51 45.1


User provided reference genes

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