Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 2.2e-39 165.2 89 100.0
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 4.5e-32 141.0 87 85.1
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 2.5e-30 135.2 87 80.5
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 3.2e-30 134.8 86 81.4
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.4e-28 129.4 87 77.0
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 2.3e-28 128.6 101 70.3
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 5.2e-28 127.5 86 77.9
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 5.2e-28 127.5 87 77.0
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 8.8e-28 126.7 113 64.6
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.1e-25 119.8 86 72.1
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.1e-25 119.8 86 72.1
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 3.1e-25 118.2 86 70.9
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 7.0e-25 117.1 88 69.3
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 2.0e-24 115.5 87 71.3
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 3.5e-24 114.8 87 70.1
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 4.5e-24 114.4 87 69.0
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 4.5e-24 114.4 87 69.0
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 7.7e-24 113.6 83 72.3
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 5.0e-23 110.9 81 71.6
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 3.2e-22 108.2 86 64.0
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 7.2e-22 107.1 88 68.2
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 4.7e-21 104.4 86 65.1
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 6.1e-21 104.0 99 59.6
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 8.0e-21 103.6 150 46.0
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 1.0e-20 103.2 86 65.1
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.4e-20 102.8 114 57.0
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 1.8e-20 102.4 103 59.2
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 1.8e-20 102.4 103 59.2
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 1.8e-20 102.4 87 66.7
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 5.2e-20 100.9 88 64.8
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 6.8e-20 100.5 134 48.5
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 8.8e-20 100.1 86 64.0
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 1.5e-19 99.4 113 53.1
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.0e-19 99.0 95 60.0
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 2.6e-19 98.6 115 53.9
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 3.4e-19 98.2 105 58.1
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.4e-19 97.8 126 49.2
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 5.7e-19 97.4 88 60.2
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 7.5e-19 97.1 86 62.8
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 2.2e-18 95.5 91 61.5
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 2.2e-18 95.5 82 64.6
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 2.2e-18 95.5 101 54.5
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.7e-18 94.7 86 60.5
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 4.8e-18 94.4 114 50.0
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.1e-17 93.2 100 59.0
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.1e-17 93.2 106 52.8
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 1.1e-17 93.2 104 52.9
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 1.8e-17 92.4 107 55.1
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 2.4e-17 92.0 87 60.9
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 2.4e-17 92.0 103 57.3
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 2.4e-17 92.0 86 61.6
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 3.1e-17 91.7 87 58.6
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 5.4e-17 90.9 129 45.7
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 7.0e-17 90.5 87 60.9
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 9.1e-17 90.1 81 64.2
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 1.2e-16 89.7 94 55.3
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.2e-16 89.7 68 67.6
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 5.9e-16 87.4 87 58.6
Zm00001eb380410 Zea mays HOM05D003821 ORTHO05D004449 1.0e-15 86.7 72 65.3
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 2.3e-15 85.5 103 52.4
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.9e-15 85.1 86 55.8
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 3.8e-15 84.7 102 55.9
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 6.6e-15 84.0 87 56.3
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 6.6e-15 84.0 99 53.5
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 8.6e-15 83.6 127 45.7
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 8.6e-15 83.6 86 57.0
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 8.6e-15 83.6 87 55.2
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 8.6e-15 83.6 80 57.5
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.1e-14 83.2 87 56.3
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.1e-14 83.2 87 56.3
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 1.5e-14 82.8 86 53.5
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 1.9e-14 82.4 84 59.5
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.9e-14 82.4 88 55.7
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 2.5e-14 82.0 87 55.2
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 2.5e-14 82.0 87 54.0
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 5.5e-14 80.9 87 54.0
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 7.2e-14 80.5 103 51.5
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 9.5e-14 80.1 87 57.5
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.6e-13 79.3 87 52.9
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 2.8e-13 78.6 95 52.6
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 2.8e-13 78.6 86 54.7
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 2.8e-13 78.6 142 40.1
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 4.7e-13 77.8 83 55.4
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 6.1e-13 77.4 83 56.6
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 6.1e-13 77.4 87 56.3
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 8.0e-13 77.0 95 51.6
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 1.0e-12 76.6 87 57.5
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 1.4e-12 76.3 87 51.7
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 1.8e-12 75.9 88 55.7
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 2.3e-12 75.5 87 54.0
CAN.G484.32 Capsicum annuum HOM05D003821 ORTHO05D004449 2.3e-12 75.5 130 46.9
Gohir.A10G164000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.3e-12 75.5 67 61.2
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 2.3e-12 75.5 87 50.6
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 2.3e-12 75.5 70 62.9
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 2.3e-12 75.5 87 50.6
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.0e-12 74.7 81 55.6
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 5.2e-12 74.3 83 55.4
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 5.2e-12 74.3 84 52.4
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 5.2e-12 74.3 87 52.9
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 1.2e-11 73.2 88 51.1
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 1.2e-11 73.2 174 35.6
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 3.4e-11 71.6 86 46.5
Gohir.D11G223400 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.4e-11 71.6 60 61.7
Mapoly0039s0070 Marchantia polymorpha HOM05D003821 ORTHO05D004449 5.7e-11 70.9 89 50.6
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 2.2e-10 68.9 45 73.3
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 2.2e-10 68.9 87 47.1
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 3.7e-10 68.2 87 50.6
Manes.05G064201 Manihot esculenta HOM05D003821 ORTHO05D004449 4.9e-10 67.8 61 63.9
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 4.9e-10 67.8 127 39.4
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 6.3e-10 67.4 41 82.9
PSO832G3070 Papaver somniferum HOM05D003821 ORTHO05D004449 6.3e-10 67.4 79 48.1
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 8.3e-10 67.0 41 80.5
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 8.3e-10 67.0 85 49.4
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 1.4e-09 66.2 41 78.0
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 1.4e-09 66.2 41 78.0
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 1.4e-09 66.2 41 78.0
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 1.8e-09 65.9 85 47.1
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 1.8e-09 65.9 41 78.0
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 3.1e-09 65.1 116 39.7
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 3.1e-09 65.1 86 47.7
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 3.1e-09 65.1 87 46.0
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 3.1e-09 65.1 41 75.6
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 4.1e-09 64.7 126 38.9
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 4.1e-09 64.7 79 49.4
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 4.1e-09 64.7 86 46.5
Gohir.D01G051650 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.4e-09 64.3 41 75.6
Gohir.D08G087850 Gossypium hirsutum HOM05D003821 ORTHO05D004449 5.4e-09 64.3 41 75.6
Gorai.002G124200 Gossypium raimondii HOM05D003821 ORTHO05D004449 5.4e-09 64.3 41 75.6
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 5.4e-09 64.3 34 91.2
Gohir.D08G106266 Gossypium hirsutum HOM05D003821 ORTHO05D004449 9.2e-09 63.5 40 77.5
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 9.2e-09 63.5 41 73.2
Zm00001eb098770 Zea mays HOM05D003821 ORTHO05D004449 9.2e-09 63.5 83 44.6
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.6e-08 62.8 86 44.2
Cre07.g329800 Chlamydomonas reinhardtii HOM05D003821 ORTHO05D004449 2.0e-08 62.4 61 50.8
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 2.0e-08 62.4 41 73.2
Pp3c16_4400 Physcomitrium patens HOM05D003821 ORTHO05D004449 2.0e-08 62.4 90 48.9
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 2.0e-08 62.4 88 46.6
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 2.0e-08 62.4 41 73.2
Hund20554 Selenicereus undatus HOM05D003821 ORTHO05D004449 2.7e-08 62.0 119 40.3
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 3.5e-08 61.6 71 50.7
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 3.5e-08 61.6 41 68.3
PSO210G2740 Papaver somniferum HOM05D003821 ORTHO05D004449 4.5e-08 61.2 79 44.3
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 4.5e-08 61.2 86 45.3
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 7.8e-08 60.5 79 48.1
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 7.8e-08 60.5 87 43.7
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 1.0e-07 60.1 43 74.4
Gorai.N022500 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.3e-07 59.7 41 75.6
Ah.08g213210 Amaranthus hybridus HOM05D003821 ORTHO05D004449 1.7e-07 59.3 46 65.2
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.7e-07 59.3 88 44.3
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 2.3e-07 58.9 82 45.1
Aa31LG8G3720 Aethionema arabicum HOM05D003821 ORTHO05D004449 2.9e-07 58.5 73 47.9
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 2.9e-07 58.5 87 43.7
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 5.0e-07 57.8 88 46.6
Gorai.005G060300 Gossypium raimondii HOM05D003821 ORTHO05D004449 6.6e-07 57.4 41 68.3
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 1.1e-06 56.6 40 67.5
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 1.1e-06 56.6 48 62.5
unitig_32.g10644 Utricularia gibba HOM05D003821 ORTHO05D004449 1.5e-06 56.2 44 63.6
GSVIVG01027975001 Vitis vinifera HOM05D003821 ORTHO05D004449 1.5e-06 56.2 41 73.2
HanXRQChr06g0169061 Helianthus annuus HOM05D003821 ORTHO05D004449 1.9e-06 55.8 41 68.3
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 2.5e-06 55.5 40 75.0
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 2.5e-06 55.5 40 75.0
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 3.3e-06 55.1 40 75.0
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.3e-06 55.1 86 43.0
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 3.3e-06 55.1 72 45.8
Gohir.A11G115200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.3e-06 54.7 86 41.9
Gohir.D11G120200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.3e-06 54.7 86 41.9
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.3e-06 54.7 86 40.7
Medtr7g108610 Medicago truncatula HOM05D003821 ORTHO05D004449 4.3e-06 54.7 46 65.2
Glyma.03G213100 Glycine max HOM05D003821 ORTHO05D004449 5.6e-06 54.3 49 57.1
MBI02_g32313_MAGBIO Magnolia biondii HOM05D036700 ORTHO05D048553 5.6e-06 54.3 52 63.5
Gorai.007G128900 Gossypium raimondii HOM05D003821 ORTHO05D004449 9.5e-06 53.5 86 41.9


User provided reference genes

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