Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 3.9e-154 548.1 281 100.0
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 3.4e-102 375.6 288 68.4
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 4.5e-102 375.2 289 67.8
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.3e-101 373.6 279 67.7
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 3.8e-101 372.1 279 67.4
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 2.1e-99 366.3 224 79.0
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 4.6e-99 365.2 247 74.1
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 1.8e-98 363.2 283 67.5
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.3e-98 362.8 241 74.7
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 2.3e-98 362.8 253 70.0
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 6.7e-98 361.3 242 72.7
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 2.6e-97 359.4 267 67.4
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 3.3e-97 359.0 233 76.4
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 9.7e-97 357.5 276 67.0
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 2.2e-96 356.3 277 66.8
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 2.2e-96 356.3 277 67.1
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 2.2e-96 356.3 254 70.5
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 3.7e-96 355.5 244 70.1
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 4.8e-96 355.1 226 75.7
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 4.8e-96 355.1 281 66.2
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.1e-95 354.0 278 66.9
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.1e-95 354.0 226 75.2
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 1.1e-95 354.0 259 68.7
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 1.8e-95 353.2 255 67.5
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.8e-95 353.2 233 73.8
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 2.4e-95 352.8 281 65.8
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 3.1e-95 352.4 284 64.1
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 4.1e-95 352.1 224 75.4
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 5.3e-95 351.7 277 66.1
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 5.3e-95 351.7 255 67.1
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 6.9e-95 351.3 275 66.2
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 6.9e-95 351.3 238 73.5
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 9.1e-95 350.9 248 69.8
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 1.2e-94 350.5 282 62.8
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 1.2e-94 350.5 289 64.4
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.5e-94 350.1 265 66.4
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 1.5e-94 350.1 233 72.1
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 2.0e-94 349.7 275 65.8
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 5.9e-94 348.2 262 67.2
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 5.9e-94 348.2 250 69.2
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 5.9e-94 348.2 250 69.2
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 5.9e-94 348.2 254 69.7
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 1.3e-93 347.1 244 69.7
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 2.2e-93 346.3 262 66.8
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 5.0e-93 345.1 237 69.2
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 5.0e-93 345.1 246 68.7
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 6.5e-93 344.7 281 63.7
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 6.5e-93 344.7 239 71.1
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 6.5e-93 344.7 248 70.6
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 3.2e-92 342.4 242 67.4
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 5.5e-92 341.7 226 74.3
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 7.2e-92 341.3 243 67.5
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 7.2e-92 341.3 286 60.8
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 9.4e-92 340.9 253 65.6
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 2.1e-91 339.7 224 75.4
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 2.1e-91 339.7 225 74.7
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 2.7e-91 339.3 224 73.7
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 3.6e-91 339.0 225 74.2
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 4.7e-91 338.6 226 74.8
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 4.7e-91 338.6 226 74.8
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 6.1e-91 338.2 226 74.3
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 7.9e-91 337.8 235 69.8
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.0e-90 337.4 257 64.6
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 1.8e-90 336.7 268 64.9
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 3.0e-90 335.9 225 73.8
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 3.9e-90 335.5 289 62.3
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 3.9e-90 335.5 244 68.9
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 5.2e-90 335.1 225 71.1
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 6.7e-90 334.7 250 65.6
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 8.8e-90 334.3 224 72.8
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 8.8e-90 334.3 261 65.1
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 1.1e-89 334.0 294 60.5
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.1e-89 334.0 262 62.2
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 2.0e-89 333.2 253 66.0
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 3.3e-89 332.4 225 72.4
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 3.3e-89 332.4 224 73.2
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 3.3e-89 332.4 260 63.8
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 4.4e-89 332.0 225 72.4
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 9.7e-89 330.9 270 61.9
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 9.7e-89 330.9 224 72.8
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.7e-88 330.1 224 71.9
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.7e-88 330.1 283 59.4
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 4.8e-88 328.6 223 72.6
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 8.2e-88 327.8 247 67.6
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 1.1e-87 327.4 259 61.4
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.4e-87 327.0 219 71.7
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 7.0e-87 324.7 224 68.3
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 3.5e-86 322.4 224 70.5
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 3.5e-86 322.4 257 63.0
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 1.5e-84 317.0 317 54.9
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 3.3e-81 305.8 224 65.6
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 7.5e-81 304.7 201 76.6
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 1.4e-79 300.4 225 68.9
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 7.0e-79 298.1 255 61.2
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 3.5e-78 295.8 281 59.1
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 2.9e-77 292.7 256 58.6
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 3.8e-77 292.4 257 58.4
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 8.5e-77 291.2 224 64.3
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 2.7e-75 286.2 217 63.1
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 1.0e-74 284.3 208 67.3
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 1.5e-73 280.4 220 61.8
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 2.2e-72 276.6 231 58.0
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 1.1e-71 274.2 226 58.4
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 2.9e-69 266.2 285 50.5
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 5.0e-69 265.4 206 66.0
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.3e-64 250.8 181 69.1
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 6.3e-64 248.4 267 53.6
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.7e-61 240.4 139 81.3
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 5.8e-49 198.7 209 49.3
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 3.5e-46 189.5 148 62.2
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 2.5e-44 183.3 243 43.2
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 1.2e-38 164.5 213 42.3
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 2.9e-32 143.3 137 56.2
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 2.7e-30 136.7 85 72.9
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.9e-28 130.6 123 56.1
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 9.6e-20 101.7 56 82.1
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 2.8e-19 100.1 82 56.1
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 2.4e-18 97.1 68 61.8
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 6.9e-18 95.5 136 42.6
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 2.6e-17 93.6 61 67.2
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 9.9e-17 91.7 122 45.9
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 4.2e-15 86.3 53 73.6
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 1.2e-14 84.7 63 58.7
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 1.3e-13 81.3 51 72.5
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 1.8e-13 80.9 62 61.3
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 3.0e-13 80.1 103 44.7
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 3.9e-13 79.7 170 35.3
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 1.9e-12 77.4 49 69.4
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 2.1e-11 73.9 53 64.2
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 1.4e-10 71.2 54 61.1
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 1.8e-10 70.9 46 65.2
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 3.4e-09 66.6 43 72.1
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 8.4e-08 62.0 81 44.4


User provided reference genes

Program Settings