Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 1.8e-48 196.4 181 100.0
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 3.0e-22 109.4 88 65.9
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 5.6e-21 105.1 89 62.9
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 7.3e-21 104.8 88 62.5
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 2.8e-20 102.8 89 61.8
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 2.8e-20 102.8 89 61.8
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 3.6e-20 102.4 89 70.8
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 8.1e-20 101.3 89 60.7
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 4.4e-18 95.5 88 60.2
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 2.2e-17 93.2 107 52.3
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.9e-16 90.1 88 64.8
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 5.4e-16 88.6 84 56.0
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 7.1e-16 88.2 85 55.3
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 1.0e-14 84.3 88 59.1
MSTRG.21461 Avicennia marina HOM05D007706 ORTHO05D009593 6.6e-14 81.6 82 58.5
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 3.3e-13 79.3 87 46.0
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 9.6e-13 77.8 85 58.8
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 1.2e-12 77.4 86 55.8
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 2.8e-12 76.3 81 65.4
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 6.2e-12 75.1 88 48.9
SalBow7G0697 Salvia bowleyana HOM05D007706 ORTHO05D009593 1.1e-11 74.3 90 50.0
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 1.4e-11 73.9 88 52.3
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 4.0e-11 72.4 86 55.8
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 5.2e-11 72.0 88 58.0
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 8.9e-11 71.2 88 52.3
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 1.2e-10 70.9 44 70.5
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 1.5e-10 70.5 88 47.7
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 2.0e-10 70.1 90 53.3
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.6e-10 69.7 88 47.7
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 3.4e-10 69.3 88 54.5
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 4.4e-10 68.9 47 68.1
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 7.6e-10 68.2 88 43.2
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 1.7e-09 67.0 45 68.9
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 2.2e-09 66.6 86 47.7
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 2.2e-09 66.6 86 47.7
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 2.2e-09 66.6 88 45.5
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 2.2e-09 66.6 88 46.6
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 2.2e-09 66.6 91 45.1
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 2.2e-09 66.6 84 54.8
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 2.2e-09 66.6 86 46.5
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.9e-09 66.2 36 77.8
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 2.9e-09 66.2 45 64.4
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.9e-09 66.2 88 44.3
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.9e-09 66.2 87 49.4
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 3.8e-09 65.9 87 55.2
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 3.8e-09 65.9 88 47.7
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 3.8e-09 65.9 88 53.4
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 3.8e-09 65.9 89 46.1
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 6.4e-09 65.1 46 63.0
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 6.4e-09 65.1 52 57.7
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 8.4e-09 64.7 45 62.2
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.1e-08 64.3 88 45.5
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 1.1e-08 64.3 36 75.0
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 1.1e-08 64.3 89 42.7
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 1.1e-08 64.3 45 66.7
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.4e-08 63.9 86 44.2
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 1.9e-08 63.5 86 45.3
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 2.4e-08 63.2 34 79.4
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 3.2e-08 62.8 81 56.8
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.2e-08 62.8 86 44.2
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 3.2e-08 62.8 84 51.2
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 3.2e-08 62.8 36 75.0
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 3.2e-08 62.8 36 75.0
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 4.2e-08 62.4 88 54.5
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 4.2e-08 62.4 43 67.4
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 4.2e-08 62.4 43 67.4
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 4.2e-08 62.4 41 68.3
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 4.2e-08 62.4 86 46.5
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 5.4e-08 62.0 43 60.5
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 5.4e-08 62.0 48 58.3
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 7.1e-08 61.6 44 65.9
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 9.3e-08 61.2 36 72.2
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 1.2e-07 60.8 88 40.9
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 1.2e-07 60.8 38 63.2
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 1.2e-07 60.8 36 69.4
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 1.2e-07 60.8 88 50.0
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.6e-07 60.5 36 72.2
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 1.6e-07 60.5 42 66.7
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 1.6e-07 60.5 87 52.9
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 1.6e-07 60.5 44 63.6
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.6e-07 60.5 32 78.1
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.1e-07 60.1 36 66.7
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 2.1e-07 60.1 53 50.9
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 2.1e-07 60.1 36 69.4
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 2.1e-07 60.1 43 65.1
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 2.7e-07 59.7 87 39.1
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 2.7e-07 59.7 42 61.9
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 2.7e-07 59.7 43 62.8
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 2.7e-07 59.7 88 39.8
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 2.7e-07 59.7 46 63.0
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 3.5e-07 59.3 43 65.1
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 3.5e-07 59.3 84 52.4
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.6e-07 58.9 34 73.5
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 4.6e-07 58.9 33 75.8
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 4.6e-07 58.9 88 44.3
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 4.6e-07 58.9 51 54.9
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 4.6e-07 58.9 35 71.4
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 4.6e-07 58.9 89 42.7
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 4.6e-07 58.9 36 69.4
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 4.6e-07 58.9 82 50.0
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 6.0e-07 58.5 41 68.3
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 6.0e-07 58.5 35 71.4
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 7.8e-07 58.2 43 65.1
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.0e-06 57.8 34 73.5
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.0e-06 57.8 36 63.9
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 1.0e-06 57.8 40 62.5
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 1.0e-06 57.8 35 71.4
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 1.3e-06 57.4 35 71.4
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.3e-06 57.4 54 55.6
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 1.3e-06 57.4 88 38.6
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 1.3e-06 57.4 36 66.7
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.7e-06 57.0 89 44.9
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 1.7e-06 57.0 37 64.9
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.7e-06 57.0 37 64.9
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 3.0e-06 56.2 50 56.0
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 3.0e-06 56.2 49 55.1
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 3.0e-06 56.2 43 60.5
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 3.0e-06 56.2 52 57.7
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 3.9e-06 55.8 36 63.9
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 3.9e-06 55.8 88 40.9
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 3.9e-06 55.8 36 63.9
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 3.9e-06 55.8 40 62.5
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 5.1e-06 55.5 35 65.7
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 5.1e-06 55.5 46 60.9
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 5.1e-06 55.5 49 53.1
Actinidia30127 Actinidia chinensis HOM05D007706 ORTHO05D009593 6.6e-06 55.1 82 42.7
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 6.6e-06 55.1 84 47.6
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 6.6e-06 55.1 35 68.6
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 6.6e-06 55.1 45 53.3
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 8.7e-06 54.7 82 50.0
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 8.7e-06 54.7 49 53.1


User provided reference genes

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