Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 7.0e-78 293.9 150 100.0
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 5.1e-36 154.8 147 58.5
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.8e-33 146.4 144 52.8
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.0e-32 142.9 149 53.0
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 2.6e-32 142.5 99 69.7
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 7.6e-32 141.0 122 57.4
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 1.3e-31 140.2 149 53.7
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.2e-31 139.4 155 53.5
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 3.8e-31 138.7 143 56.6
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.8e-31 138.7 155 51.6
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 4.9e-31 138.3 153 52.3
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 1.1e-30 137.1 148 52.0
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.9e-30 136.3 154 53.2
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 1.9e-30 136.3 154 53.2
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 3.2e-30 135.6 146 54.8
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 4.2e-30 135.2 123 56.1
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 5.5e-30 134.8 155 52.3
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 7.1e-30 134.4 148 48.6
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 9.3e-30 134.0 153 52.3
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 1.6e-29 133.3 141 56.7
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 1.0e-28 130.6 149 49.7
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 1.0e-28 130.6 120 54.2
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 3.0e-28 129.0 161 47.8
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 3.9e-28 128.6 141 49.6
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 5.1e-28 128.3 146 47.9
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 6.7e-28 127.9 141 53.2
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 1.5e-27 126.7 156 50.6
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.5e-27 125.9 142 48.6
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 3.3e-27 125.6 131 54.2
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 4.3e-27 125.2 140 47.1
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 4.3e-27 125.2 154 50.0
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 5.6e-27 124.8 142 48.6
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 5.6e-27 124.8 142 48.6
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 5.6e-27 124.8 152 48.7
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 5.6e-27 124.8 149 49.0
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 7.4e-27 124.4 136 51.5
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 9.6e-27 124.0 146 50.7
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 9.6e-27 124.0 128 53.1
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 1.6e-26 123.2 155 49.0
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 2.1e-26 122.9 138 46.4
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.8e-26 122.5 140 52.1
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 3.7e-26 122.1 147 50.3
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 4.8e-26 121.7 146 49.3
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.8e-26 121.7 138 50.7
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 8.2e-26 120.9 143 46.2
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 8.2e-26 120.9 155 44.5
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 1.1e-25 120.6 142 47.2
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.1e-25 120.6 135 49.6
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 1.4e-25 120.2 139 51.1
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 4.0e-25 118.6 135 51.1
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 4.0e-25 118.6 141 46.1
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 4.0e-25 118.6 150 44.7
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 5.3e-25 118.2 98 62.2
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 5.3e-25 118.2 141 44.7
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 6.9e-25 117.9 155 45.2
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 1.2e-24 117.1 157 47.1
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 1.5e-24 116.7 149 43.0
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.6e-24 115.9 146 49.3
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 4.5e-24 115.2 137 53.3
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 4.5e-24 115.2 153 44.4
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 5.8e-24 114.8 115 53.0
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 5.8e-24 114.8 152 45.4
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.3e-23 113.6 149 42.3
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 1.3e-23 113.6 138 52.9
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.3e-23 113.6 134 47.8
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 2.2e-23 112.8 125 52.8
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 2.2e-23 112.8 131 44.3
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 2.2e-23 112.8 112 50.9
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.2e-23 112.8 129 51.9
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 3.8e-23 112.1 142 46.5
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.8e-23 112.1 142 46.5
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 3.8e-23 112.1 116 50.9
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 3.8e-23 112.1 116 50.9
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 4.9e-23 111.7 151 43.7
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 8.4e-23 110.9 143 41.3
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.9e-22 109.8 146 45.9
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 4.2e-22 108.6 143 45.5
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 5.5e-22 108.2 151 43.0
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 7.1e-22 107.8 131 48.1
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 9.3e-22 107.5 168 38.1
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.5e-21 105.5 161 42.9
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 6.0e-21 104.8 164 39.0
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 7.9e-21 104.4 146 43.2
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 1.0e-20 104.0 126 43.7
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 1.3e-20 103.6 138 43.5
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.3e-20 103.6 141 41.8
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 3.9e-20 102.1 141 39.0
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 5.1e-20 101.7 154 38.3
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 8.7e-20 100.9 152 42.8
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 1.5e-19 100.1 140 41.4
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 2.5e-19 99.4 132 43.2
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.3e-19 99.0 120 49.2
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 5.7e-19 98.2 158 43.0
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 7.4e-19 97.8 139 41.0
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 7.4e-19 97.8 139 41.0
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 7.4e-19 97.8 157 39.5
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 7.4e-19 97.8 157 39.5
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 7.4e-19 97.8 126 47.6
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 9.7e-19 97.4 142 41.5
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 9.7e-19 97.4 150 40.0
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 9.7e-19 97.4 150 40.0
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 1.3e-18 97.1 156 37.2
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.6e-18 96.7 155 42.6
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 3.7e-18 95.5 157 38.9
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 3.7e-18 95.5 157 38.9
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 4.8e-18 95.1 144 45.1
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 2.4e-17 92.8 153 40.5
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 2.4e-17 92.8 157 38.9
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.1e-17 92.4 111 50.5
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 3.1e-17 92.4 143 39.2
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 4.1e-17 92.0 135 39.3
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 6.9e-17 91.3 147 40.1
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 6.9e-17 91.3 146 36.3
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 9.0e-17 90.9 140 40.0
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 1.2e-16 90.5 156 39.1
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 1.2e-16 90.5 151 41.7
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 1.2e-16 90.5 151 41.7
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 1.2e-16 90.5 151 41.7
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 1.2e-16 90.5 135 39.3
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 1.2e-16 90.5 126 39.7
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.5e-16 90.1 131 40.5
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 1.5e-16 90.1 131 40.5
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 1.5e-16 90.1 131 40.5
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 1.5e-16 90.1 141 40.4
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 2.0e-16 89.7 159 40.3
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 4.5e-16 88.6 129 41.9
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 5.9e-16 88.2 155 41.9
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 5.9e-16 88.2 141 41.8
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 1.3e-15 87.0 145 37.9
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 8.5e-15 84.3 134 38.1
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 5.1e-12 75.1 133 36.1
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 9.7e-11 70.9 64 56.2
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 1.7e-10 70.1 78 50.0
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.1e-09 67.4 91 46.2
Migut.E00712 Erythranthe guttata HOM05D005336 ORTHO05D006511 2.4e-09 66.2 89 48.3
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 4.1e-09 65.5 70 47.1
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 4.1e-09 65.5 124 31.5
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.2e-08 63.9 142 31.7
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.5e-08 63.5 161 32.3
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 4.5e-08 62.0 144 31.2
MELO3C005998.2 Cucumis melo HOM05D030996 ORTHO05D004349 2.5e-06 56.2 95 34.7
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 3.2e-06 55.8 127 31.5
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 3.2e-06 55.8 129 31.0
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 5.5e-06 55.1 108 38.0
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 5.5e-06 55.1 150 29.3
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 7.2e-06 54.7 112 37.5
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 7.2e-06 54.7 93 36.6


User provided reference genes

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