Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 8.1e-74 280.4 151 100.0
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.3e-15 87.0 156 42.3
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.2e-15 86.3 140 40.7
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 4.2e-14 82.0 144 36.1
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 5.5e-14 81.6 124 43.5
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 7.2e-14 81.3 110 48.2
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 7.2e-14 81.3 142 39.4
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 1.2e-13 80.5 126 42.9
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 1.2e-13 80.5 150 40.7
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.6e-13 80.1 126 40.5
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.6e-13 80.1 147 35.4
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 2.7e-13 79.3 147 39.5
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.7e-13 79.3 135 38.5
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 3.6e-13 79.0 115 46.1
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 6.1e-13 78.2 140 40.0
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 6.1e-13 78.2 140 40.0
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.1e-13 78.2 147 40.1
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 8.0e-13 77.8 152 41.4
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 8.0e-13 77.8 144 38.9
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 1.8e-12 76.6 139 41.0
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.3e-12 76.3 109 45.9
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 2.3e-12 76.3 122 41.8
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 2.3e-12 76.3 126 38.9
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 4.0e-12 75.5 127 41.7
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 5.2e-12 75.1 127 39.4
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 5.2e-12 75.1 112 42.0
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 6.7e-12 74.7 140 38.6
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 1.5e-11 73.6 120 37.5
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.5e-11 73.6 136 40.4
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 3.3e-11 72.4 116 41.4
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.3e-11 72.4 142 38.0
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 3.3e-11 72.4 123 42.3
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 5.7e-11 71.6 152 38.8
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 5.7e-11 71.6 118 42.4
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 5.7e-11 71.6 157 35.7
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 7.5e-11 71.2 127 43.3
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 7.5e-11 71.2 121 39.7
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 7.5e-11 71.2 154 35.7
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 9.7e-11 70.9 151 37.1
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 9.7e-11 70.9 120 40.0
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-10 70.5 136 37.5
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.3e-10 70.5 123 40.7
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 1.3e-10 70.5 131 39.7
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.7e-10 70.1 140 38.6
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.2e-10 69.7 115 39.1
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.2e-10 69.7 123 39.0
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.2e-10 69.7 144 41.0
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.2e-10 69.7 144 41.0
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 2.2e-10 69.7 120 40.0
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 2.2e-10 69.7 112 42.9
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.8e-10 69.3 142 37.3
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.8e-10 69.3 129 38.0
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 2.8e-10 69.3 148 41.9
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 2.8e-10 69.3 146 39.7
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 3.7e-10 68.9 120 38.3
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 3.7e-10 68.9 143 39.9
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 3.7e-10 68.9 118 39.8
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 4.8e-10 68.6 99 43.4
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 6.3e-10 68.2 158 36.7
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 6.3e-10 68.2 130 42.3
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.3e-10 68.2 146 34.2
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 6.3e-10 68.2 145 36.6
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 8.2e-10 67.8 145 36.6
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 8.2e-10 67.8 90 44.4
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.1e-09 67.4 161 36.0
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.1e-09 67.4 103 43.7
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 1.1e-09 67.4 112 42.0
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.1e-09 67.4 112 42.0
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.1e-09 67.4 112 42.0
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-09 67.4 148 36.5
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 1.1e-09 67.4 148 38.5
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 1.1e-09 67.4 153 35.9
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-09 67.4 145 35.9
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 1.1e-09 67.4 110 40.9
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.4e-09 67.0 125 39.2
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.8e-09 66.6 145 35.9
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 2.4e-09 66.2 145 35.9
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.4e-09 66.2 111 41.4
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-09 66.2 146 39.0
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.1e-09 65.9 111 42.3
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 3.1e-09 65.9 129 38.0
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 3.1e-09 65.9 146 39.0
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 4.1e-09 65.5 130 41.5
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 4.1e-09 65.5 133 36.1
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 5.3e-09 65.1 111 42.3
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 5.3e-09 65.1 145 35.2
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 7.0e-09 64.7 118 39.0
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 7.0e-09 64.7 163 33.1
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 7.0e-09 64.7 149 35.6
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 7.0e-09 64.7 152 34.2
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 7.0e-09 64.7 150 37.3
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 9.1e-09 64.3 133 36.8
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 1.2e-08 63.9 119 38.7
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-08 63.9 145 35.2
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-08 63.9 145 35.2
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 1.6e-08 63.5 127 40.2
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.0e-08 63.2 157 35.7
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 2.0e-08 63.2 151 34.4
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.0e-08 63.2 153 35.3
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 2.7e-08 62.8 133 36.8
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 2.7e-08 62.8 124 39.5
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.7e-08 62.8 151 32.5
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 2.7e-08 62.8 145 35.2
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.5e-08 62.4 114 38.6
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.5e-08 62.4 154 36.4
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.5e-08 62.4 154 36.4
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-08 62.4 145 35.2
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 5.9e-08 61.6 144 31.9
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 5.9e-08 61.6 145 35.2
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 7.7e-08 61.2 118 38.1
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 1.0e-07 60.8 145 35.2
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.0e-07 60.8 145 31.0
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 1.3e-07 60.5 133 34.6
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.3e-07 60.5 114 37.7
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-07 60.5 122 38.5
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 2.2e-07 59.7 151 36.4
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 2.9e-07 59.3 141 35.5
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 3.8e-07 58.9 152 36.2
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.8e-07 58.9 128 35.2
DCAR_002472 Daucus carota HOM05D003565 ORTHO05D003943 3.8e-07 58.9 131 37.4
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 3.8e-07 58.9 149 35.6
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 3.8e-07 58.9 153 35.3
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 3.8e-07 58.9 119 37.0
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 5.0e-07 58.5 105 35.2
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 6.5e-07 58.2 114 36.8
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 6.5e-07 58.2 114 34.2
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 8.5e-07 57.8 133 39.1
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 8.5e-07 57.8 157 35.7
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.5e-07 57.8 157 31.2
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 8.5e-07 57.8 121 36.4
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.1e-06 57.4 115 37.4
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.1e-06 57.4 138 33.3
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.1e-06 57.4 138 33.3
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.5e-06 56.2 122 34.4
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 2.5e-06 56.2 92 41.3
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 4.2e-06 55.5 122 38.5
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 7.2e-06 54.7 85 43.5
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 7.2e-06 54.7 127 34.6
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 7.2e-06 54.7 136 33.1


User provided reference genes

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