Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.2e-141 506.5 270 100.0
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 1.4e-100 370.2 266 77.8
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 2.0e-99 366.3 264 76.5
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 8.4e-98 360.9 257 77.0
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 5.1e-95 351.7 264 75.0
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.1e-94 350.5 257 75.5
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 3.7e-93 345.5 255 75.3
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 2.4e-92 342.8 261 72.4
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 2.9e-90 335.9 261 70.9
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 2.5e-89 332.8 265 71.7
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 4.2e-89 332.0 255 73.3
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 9.3e-89 330.9 257 72.8
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 9.3e-89 330.9 261 70.9
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 9.3e-89 330.9 253 73.9
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 9.3e-89 330.9 262 72.5
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 9.3e-89 330.9 261 72.0
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 1.2e-88 330.5 261 72.4
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.6e-88 330.1 264 71.2
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.6e-88 328.6 261 70.9
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 6.1e-88 328.2 261 70.5
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 7.9e-88 327.8 257 71.2
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.0e-87 327.4 262 71.4
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.3e-87 327.0 261 70.1
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.0e-87 325.9 261 70.5
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 3.9e-87 325.5 261 69.7
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 3.9e-87 325.5 261 70.9
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 5.1e-87 325.1 261 71.6
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 8.7e-87 324.3 270 69.3
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 2.5e-86 322.8 252 70.2
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 7.4e-86 321.2 257 70.8
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.3e-85 320.5 261 69.0
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 1.3e-85 320.5 264 68.6
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 2.2e-85 319.7 291 64.9
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 8.2e-85 317.8 259 70.7
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.1e-84 317.4 265 70.6
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 1.4e-84 317.0 295 65.4
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 1.8e-84 316.6 258 69.8
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 4.1e-84 315.5 261 69.0
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 6.9e-84 314.7 284 66.9
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.2e-83 313.9 268 69.8
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.6e-83 312.8 263 67.7
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 3.4e-83 312.4 257 70.8
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 2.9e-82 309.3 252 69.8
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 5.0e-82 308.5 254 69.7
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 6.5e-82 308.1 252 69.4
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.1e-81 307.4 264 67.8
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 1.4e-81 307.0 266 66.9
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 4.2e-81 305.4 255 67.1
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 5.5e-81 305.1 255 69.0
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 9.4e-81 304.3 258 65.9
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 1.6e-80 303.5 262 66.0
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 4.6e-80 302.0 264 67.8
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 1.0e-79 300.8 257 66.9
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.4e-79 300.4 255 67.8
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 2.3e-79 299.7 267 67.8
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.9e-79 298.9 261 66.7
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 1.1e-78 297.4 259 64.5
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 1.1e-78 297.4 261 67.4
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 3.3e-78 295.8 265 66.8
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 5.7e-78 295.0 262 63.7
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 7.4e-78 294.7 257 65.4
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.3e-77 293.9 237 70.0
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 2.2e-77 293.1 257 65.8
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.8e-77 292.7 257 65.4
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 3.7e-77 292.4 257 65.8
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.4e-76 290.4 255 66.3
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 5.9e-75 285.0 258 65.1
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 5.9e-75 285.0 258 65.1
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 2.9e-74 282.7 264 64.8
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 7.2e-73 278.1 266 62.8
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.6e-72 276.9 257 63.4
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 3.6e-72 275.8 274 59.5
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.4e-71 273.9 257 65.0
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.4e-71 273.9 247 68.8
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.4e-71 273.9 264 62.9
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.8e-71 273.5 265 62.6
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.8e-71 273.5 236 67.4
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 3.9e-71 272.3 265 62.3
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.1e-70 270.8 236 66.9
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 5.7e-70 268.5 262 63.0
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.3e-69 267.3 266 59.4
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.2e-69 266.5 270 61.5
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 3.7e-69 265.8 247 62.8
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 1.1e-68 264.2 247 62.3
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.2e-67 260.8 264 61.0
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.5e-67 260.4 266 57.9
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 3.5e-67 259.2 210 69.5
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 5.9e-67 258.5 252 62.7
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.7e-66 256.9 264 60.6
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 2.9e-66 256.1 212 68.9
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.5e-65 253.8 263 60.1
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 7.2e-65 251.5 212 66.0
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 7.2e-65 251.5 205 68.8
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 2.1e-64 250.0 271 56.8
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 8.0e-64 248.1 262 56.5
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 8.0e-64 248.1 252 61.1
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 1.8e-63 246.9 210 66.2
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 4.0e-63 245.7 233 63.9
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 4.0e-63 245.7 261 57.5
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 4.4e-62 242.3 264 58.0
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 4.1e-60 235.7 241 58.1
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 5.3e-60 235.3 227 59.9
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 5.3e-60 235.3 227 59.9
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.2e-59 234.2 262 56.1
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 1.7e-58 230.3 217 62.2
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 3.6e-56 222.6 253 54.2
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.7e-53 213.8 252 56.0
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 4.8e-53 212.2 226 56.6
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 6.3e-53 211.8 243 55.1
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 8.3e-53 211.5 236 50.8
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 1.6e-51 207.2 244 53.7
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 1.0e-50 204.5 212 55.7
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.7e-45 187.2 219 51.1
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 3.1e-44 183.0 158 62.0
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 2.0e-43 180.3 157 61.8
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 1.5e-41 174.1 243 45.7
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 2.5e-41 173.3 137 72.3
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 7.2e-41 171.8 204 52.5
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 2.1e-40 170.2 128 71.9
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 1.8e-39 167.2 150 66.7
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 4.4e-38 162.5 160 55.6
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.0e-35 153.7 162 56.2
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 2.0e-35 153.7 137 64.2
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 4.6e-35 152.5 148 60.1
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 4.3e-33 146.0 91 87.9
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 5.2e-31 139.0 270 41.9
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 2.2e-29 133.7 91 82.4
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 2.4e-28 130.2 91 81.3
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 7.0e-28 128.6 91 78.0
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.5e-27 126.3 128 58.6
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 6.0e-27 125.6 283 39.6
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 3.9e-26 122.9 90 74.4
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 3.3e-25 119.8 91 69.2
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 1.6e-24 117.5 86 75.6
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 2.1e-24 117.1 89 74.2
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.1e-23 114.8 225 38.2
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.4e-23 114.4 231 39.0
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 2.3e-23 113.6 89 73.0
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 1.7e-21 107.5 245 38.4
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 2.1e-19 100.5 91 58.2
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 2.7e-19 100.1 264 34.5
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.8e-15 87.4 147 43.5
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 2.0e-14 84.0 200 37.5


User provided reference genes

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