Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 1.1e-218 763.1 402 100.0
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 8.8e-176 620.5 466 74.0
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 1.2e-153 547.0 466 65.5
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.1e-149 533.9 466 63.9
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 2.7e-140 502.7 462 59.5
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.9e-130 469.9 457 59.7
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.3e-120 436.4 469 55.4
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 4.4e-119 432.2 465 55.3
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 9.2e-117 424.5 467 54.4
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 4.6e-116 422.2 465 52.5
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.6e-116 422.2 402 60.9
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 7.8e-116 421.4 460 56.1
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 1.1e-112 411.0 460 54.6
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 8.4e-110 401.4 471 52.0
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.8e-105 386.3 400 57.2
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 1.2e-103 380.9 468 50.9
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 4.9e-102 375.6 472 49.6
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 1.1e-101 374.4 435 51.5
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 4.2e-101 372.5 472 49.2
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.2e-100 370.9 463 49.0
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 3.9e-99 365.9 430 51.4
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.1e-98 364.4 471 50.5
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 2.8e-97 359.8 468 48.3
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 5.3e-96 355.5 431 49.2
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 5.8e-95 352.1 468 47.2
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 2.2e-94 350.1 465 46.7
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 2.2e-94 350.1 464 47.6
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 6.4e-94 348.6 481 48.2
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 1.0e-91 341.3 470 48.5
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 3.0e-91 339.7 467 47.5
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 8.7e-91 338.2 465 46.0
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 1.9e-90 337.0 430 45.8
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 5.6e-90 335.5 428 46.0
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 5.6e-90 335.5 469 46.3
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 1.6e-89 334.0 472 46.0
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 2.8e-89 333.2 473 45.9
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.1e-88 331.3 464 43.5
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 1.4e-88 330.9 440 46.6
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.9e-88 328.6 470 43.8
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 6.9e-88 328.6 450 47.3
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 6.9e-88 328.6 461 45.1
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 9.0e-88 328.2 409 47.2
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 5.8e-87 325.5 382 52.4
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 1.7e-86 323.9 463 44.5
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 1.7e-86 323.9 425 44.9
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 4.9e-86 322.4 464 44.4
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 4.9e-86 322.4 455 45.7
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.9e-85 320.5 472 45.3
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.6e-84 317.4 466 44.4
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 2.1e-84 317.0 462 45.0
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 2.7e-84 316.6 467 43.3
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 3.5e-84 316.2 465 42.2
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.9e-83 312.8 464 42.5
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.9e-83 312.8 464 42.5
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.1e-82 311.2 472 44.1
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 1.1e-82 311.2 447 44.1
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 1.9e-82 310.5 462 45.9
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 2.5e-82 310.1 466 43.8
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 2.5e-82 310.1 441 45.6
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 7.4e-82 308.5 472 43.9
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 9.6e-82 308.1 465 43.7
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 1.3e-81 307.8 441 45.1
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 1.3e-81 307.8 470 42.3
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.6e-81 307.4 476 43.7
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.6e-81 307.4 430 43.5
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 2.1e-81 307.0 470 42.6
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 1.4e-80 304.3 473 43.3
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.8e-80 303.9 463 44.3
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.8e-80 303.9 455 43.7
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.2e-79 301.2 466 43.8
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.2e-79 301.2 453 43.5
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 2.0e-79 300.4 521 39.9
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 4.5e-79 299.3 457 43.8
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 7.6e-79 298.5 425 43.5
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 7.6e-79 298.5 453 43.0
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.0e-78 298.1 471 41.2
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.0e-78 298.1 464 41.2
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 1.3e-78 297.7 427 42.9
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.3e-78 297.7 451 42.4
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 2.2e-78 297.0 464 41.2
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 2.2e-78 297.0 464 41.2
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 2.9e-78 296.6 463 41.0
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 3.8e-78 296.2 474 44.5
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 8.5e-78 295.0 428 43.9
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 2.5e-77 293.5 433 43.9
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 3.2e-77 293.1 422 44.5
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.2e-77 292.7 449 41.4
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 5.5e-77 292.4 464 40.5
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 9.3e-77 291.6 464 40.3
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 9.3e-77 291.6 421 44.4
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.2e-76 291.2 470 40.9
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 3.6e-76 289.7 462 40.9
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 4.6e-76 289.3 457 43.5
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.0e-75 288.1 471 43.3
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 1.3e-75 287.7 453 44.2
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 6.7e-75 285.4 453 42.8
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 1.1e-74 284.6 393 46.6
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 2.5e-74 283.5 456 41.0
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 2.5e-74 283.5 463 40.8
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 2.5e-74 283.5 463 39.7
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 3.3e-74 283.1 425 41.6
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.3e-74 283.1 470 41.5
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 5.7e-74 282.3 470 41.3
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 7.4e-74 282.0 463 39.3
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 6.3e-73 278.9 425 41.4
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 2.6e-71 273.5 464 37.9
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 3.8e-70 269.6 427 40.7
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.5e-70 268.9 494 41.9
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 1.1e-69 268.1 471 41.6
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 3.2e-69 266.5 463 38.9
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 7.2e-69 265.4 482 38.0
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 9.4e-69 265.0 469 38.2
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.1e-68 263.8 458 41.0
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 6.1e-68 262.3 445 41.3
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 8.8e-67 258.5 469 39.2
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.5e-66 257.7 473 40.4
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 4.4e-66 256.1 422 43.4
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.8e-64 250.8 449 38.3
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 2.4e-64 250.4 224 60.3
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 2.4e-64 250.4 469 37.5
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.1e-61 241.5 224 58.0
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 3.9e-59 233.0 423 39.0
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 8.8e-51 205.3 462 34.6
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 5.7e-50 202.6 455 33.2
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 1.4e-48 198.0 154 68.2
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 3.1e-48 196.8 221 48.4
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 3.8e-46 189.9 181 56.4
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 6.5e-46 189.1 413 32.0
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.2e-45 186.4 149 63.8
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 1.2e-39 168.3 473 31.1
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.9e-37 161.0 135 63.7
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 1.0e-35 155.2 402 30.6
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.3e-35 154.1 402 34.1
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 5.2e-35 152.9 314 34.1
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.8e-31 139.0 229 42.4
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.8e-28 130.6 123 58.5
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 6.1e-28 129.4 136 46.3
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 4.0e-27 126.7 269 40.1
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 4.1e-24 116.7 465 25.4
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.1e-24 116.7 136 47.1
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 7.0e-24 115.9 104 60.6
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.2e-23 115.2 146 41.8
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.6e-23 113.2 174 46.6
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 6.6e-22 109.4 140 41.4
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 3.6e-20 103.6 117 52.1
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 6.2e-20 102.8 432 25.9
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 6.8e-19 99.4 134 40.3
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 3.4e-18 97.1 411 25.1
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 3.4e-18 97.1 141 38.3
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 2.2e-17 94.4 106 50.0
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 2.4e-16 90.9 123 43.9
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 5.4e-16 89.7 85 56.5
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 7.0e-16 89.4 468 24.6
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.5e-15 87.0 178 39.3
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 4.3e-13 80.1 109 47.7
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 6.8e-11 72.8 146 38.4
Sopen01g047030 Solanum pennellii HOM05D003578 ORTHO05D004021 8.9e-11 72.4 79 51.9
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.2e-10 72.0 62 59.7
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.2e-10 72.0 62 59.7
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 8.3e-09 65.9 84 35.7
AagrBONN_evm.TU.Sc2ySwM_228.1577 Anthoceros agrestis HOM05D003578 ORTHO05D004021 1.4e-08 65.1 226 24.3
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 5.4e-08 63.2 188 26.6
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 4.6e-07 60.1 138 37.7
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 1.0e-06 58.9 118 29.7


User provided reference genes

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