Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 7.0e-56 220.3 107 100.0
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.5e-29 132.1 117 63.2
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 6.9e-27 124.0 110 64.5
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 6.9e-27 124.0 115 59.1
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 1.7e-25 119.4 112 58.9
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 2.2e-25 119.0 137 55.5
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 8.4e-25 117.1 127 55.1
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.4e-24 116.3 127 55.1
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.6e-23 112.8 114 56.1
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 2.7e-23 112.1 111 55.0
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 6.0e-23 110.9 118 53.4
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.9e-23 110.5 128 53.1
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 7.9e-23 110.5 109 57.8
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.0e-22 110.2 114 56.1
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.3e-22 109.0 118 52.5
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 5.1e-22 107.8 135 51.1
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 6.7e-22 107.5 94 58.5
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 2.5e-21 105.5 115 53.9
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 4.3e-21 104.8 117 54.7
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 5.6e-21 104.4 102 52.0
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 5.6e-21 104.4 51 90.2
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 7.4e-21 104.0 100 56.0
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 9.6e-21 103.6 120 52.5
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.3e-20 103.2 120 52.5
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.3e-20 103.2 110 52.7
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.6e-20 102.8 100 57.0
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.6e-20 102.8 79 65.8
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.1e-20 102.4 124 50.0
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.8e-20 102.1 120 53.3
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 2.8e-20 102.1 118 49.2
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.8e-20 102.1 109 54.1
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 2.8e-20 102.1 125 49.6
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 2.4e-19 99.0 76 65.8
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 3.1e-19 98.6 51 82.4
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 4.0e-19 98.2 106 55.7
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 4.0e-19 98.2 119 50.4
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 4.0e-19 98.2 129 45.0
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 5.3e-19 97.8 70 65.7
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 6.9e-19 97.4 47 89.4
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 6.9e-19 97.4 105 48.6
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 6.9e-19 97.4 90 53.3
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 6.9e-19 97.4 122 46.7
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.5e-18 96.3 66 72.7
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.5e-18 96.3 128 41.4
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 1.5e-18 96.3 49 83.7
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.5e-18 96.3 54 77.8
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.5e-18 96.3 132 47.0
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 2.0e-18 95.9 89 56.2
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 2.0e-18 95.9 89 56.2
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 2.0e-18 95.9 65 69.2
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 2.0e-18 95.9 74 60.8
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 2.0e-18 95.9 114 50.9
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 2.6e-18 95.5 77 59.7
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 2.6e-18 95.5 51 82.4
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.6e-18 95.5 126 43.7
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.4e-18 95.1 60 75.0
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 3.4e-18 95.1 55 80.0
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 3.4e-18 95.1 47 87.2
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 4.5e-18 94.7 50 82.0
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 4.5e-18 94.7 47 87.2
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 4.5e-18 94.7 66 68.2
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 5.8e-18 94.4 47 85.1
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.8e-18 94.4 47 85.1
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.8e-18 94.4 47 85.1
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 5.8e-18 94.4 72 63.9
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 5.8e-18 94.4 103 51.5
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 5.8e-18 94.4 49 83.7
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 7.6e-18 94.0 59 66.1
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 7.6e-18 94.0 47 85.1
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 9.9e-18 93.6 50 82.0
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 9.9e-18 93.6 76 57.9
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 9.9e-18 93.6 50 80.0
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.9e-18 93.6 110 48.2
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 9.9e-18 93.6 110 48.2
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 9.9e-18 93.6 115 50.4
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 9.9e-18 93.6 97 53.6
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 9.9e-18 93.6 48 81.2
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 9.9e-18 93.6 47 85.1
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 9.9e-18 93.6 60 68.3
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.3e-17 93.2 55 76.4
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.3e-17 93.2 47 83.0
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.7e-17 92.8 46 84.8
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.7e-17 92.8 89 53.9
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 1.7e-17 92.8 49 83.7
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.2e-17 92.4 50 80.0
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 2.2e-17 92.4 50 80.0
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 2.2e-17 92.4 56 71.4
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.2e-17 92.4 59 69.5
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.9e-17 92.0 50 76.0
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 2.9e-17 92.0 78 59.0
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 2.9e-17 92.0 50 80.0
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 2.9e-17 92.0 50 80.0
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.9e-17 92.0 104 48.1
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 4.9e-17 91.3 47 80.9
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 4.9e-17 91.3 49 77.6
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 4.9e-17 91.3 49 77.6
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 6.4e-17 90.9 47 83.0
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 6.4e-17 90.9 72 61.1
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 6.4e-17 90.9 52 75.0
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 6.4e-17 90.9 137 40.9
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.1e-16 90.1 105 44.8
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.4e-16 89.7 50 74.0
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.4e-16 89.7 46 80.4
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.9e-16 89.4 68 60.3
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 1.9e-16 89.4 72 58.3
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 4.2e-16 88.2 49 77.6
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 4.2e-16 88.2 169 40.2
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 4.2e-16 88.2 49 75.5
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 5.5e-16 87.8 100 46.0
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.1e-15 85.9 70 54.3
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.8e-14 82.8 66 59.1
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 3.9e-14 81.6 51 64.7
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 3.9e-14 81.6 51 58.8
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 1.5e-13 79.7 48 64.6
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 5.6e-13 77.8 36 83.3
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.3e-12 76.6 50 64.0
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 9.0e-11 70.5 75 44.0
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.2e-10 70.1 44 68.2
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 2.0e-10 69.3 29 96.6
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 2.0e-10 69.3 29 96.6
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.0e-10 69.3 29 96.6
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.6e-10 68.9 29 96.6
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 7.6e-10 67.4 58 48.3
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.0e-09 67.0 29 93.1
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 4.2e-08 61.6 29 79.3
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 5.5e-08 61.2 42 64.3
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 4.6e-07 58.2 47 44.7
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 3.9e-06 55.1 48 45.8


User provided reference genes

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