Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 6.9e-136 487.3 239 100.0
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 2.2e-65 253.1 231 58.9
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 4.1e-64 248.8 240 56.7
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 9.2e-64 247.7 246 55.3
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 1.5e-61 240.4 243 55.6
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 1.4e-59 233.8 244 56.1
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 2.3e-59 233.0 176 68.8
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.5e-58 230.3 240 57.1
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 2.0e-58 229.9 233 54.5
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 3.4e-58 229.2 244 52.0
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 7.5e-58 228.0 240 56.2
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.3e-57 227.3 178 65.2
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.3e-57 227.3 178 65.2
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 1.3e-57 227.3 178 65.2
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 6.4e-57 224.9 193 61.1
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 8.3e-57 224.6 155 71.0
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 8.3e-57 224.6 188 61.7
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.1e-56 224.2 195 61.5
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.9e-56 223.4 241 55.2
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 4.1e-56 222.2 152 68.4
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 4.1e-56 222.2 154 71.4
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 5.4e-56 221.9 219 57.5
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 9.2e-56 221.1 155 67.1
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.2e-55 220.7 218 56.9
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.6e-55 220.3 158 67.7
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 1.6e-55 220.3 235 53.2
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 2.1e-55 219.9 216 54.6
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 3.5e-55 219.2 213 56.3
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 3.5e-55 219.2 158 67.7
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.6e-55 218.8 251 50.6
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 6.0e-55 218.4 181 63.0
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 6.0e-55 218.4 221 52.9
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 6.0e-55 218.4 159 67.3
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 7.8e-55 218.0 160 66.2
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 7.8e-55 218.0 159 68.6
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 7.8e-55 218.0 225 53.3
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 1.0e-54 217.6 135 73.3
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.0e-54 217.6 157 67.5
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.3e-54 217.2 160 68.8
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 1.3e-54 217.2 159 66.7
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 1.3e-54 217.2 220 54.5
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.3e-54 217.2 156 68.6
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 1.7e-54 216.9 240 51.2
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 1.7e-54 216.9 215 53.5
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.3e-54 216.5 160 65.6
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.3e-54 216.5 160 65.6
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 2.3e-54 216.5 160 65.6
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 3.9e-54 215.7 140 74.3
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 3.9e-54 215.7 130 76.9
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 5.1e-54 215.3 235 53.2
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 6.6e-54 214.9 155 68.4
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 6.6e-54 214.9 245 53.1
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 8.6e-54 214.5 148 68.9
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 1.1e-53 214.2 160 66.9
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.1e-53 214.2 200 57.5
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.5e-53 213.8 239 50.2
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 1.9e-53 213.4 252 50.4
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 1.9e-53 213.4 181 61.3
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.9e-53 213.4 220 53.6
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 1.9e-53 213.4 155 67.7
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.3e-53 212.6 207 55.6
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 4.3e-53 212.2 181 60.8
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 4.3e-53 212.2 216 53.7
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 4.3e-53 212.2 158 65.2
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 4.3e-53 212.2 230 52.6
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 9.5e-53 211.1 140 71.4
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 9.5e-53 211.1 245 51.8
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 1.6e-52 210.3 243 50.6
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 2.1e-52 209.9 162 64.2
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 2.1e-52 209.9 148 70.3
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 3.6e-52 209.1 175 61.1
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 3.6e-52 209.1 192 55.7
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 4.7e-52 208.8 158 66.5
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 4.7e-52 208.8 155 68.4
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 4.7e-52 208.8 130 75.4
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 6.2e-52 208.4 197 54.3
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 8.1e-52 208.0 165 63.0
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 8.1e-52 208.0 167 62.3
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 1.4e-51 207.2 147 70.1
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.4e-51 207.2 251 48.6
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 2.4e-51 206.5 162 63.0
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 2.4e-51 206.5 219 51.6
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 3.1e-51 206.1 252 49.6
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 4.0e-51 205.7 210 54.8
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 4.0e-51 205.7 167 64.1
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 5.2e-51 205.3 174 60.9
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 5.2e-51 205.3 174 60.9
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 5.2e-51 205.3 174 60.9
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 5.2e-51 205.3 209 56.0
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.2e-50 204.1 158 66.5
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 1.2e-50 204.1 148 68.9
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 2.0e-50 203.4 171 60.8
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 2.6e-50 203.0 219 51.1
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 3.4e-50 202.6 152 66.4
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 4.4e-50 202.2 250 51.6
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 4.4e-50 202.2 244 48.4
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 5.8e-50 201.8 166 60.2
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 1.7e-49 200.3 170 57.6
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 2.2e-49 199.9 151 65.6
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.1e-48 197.6 149 65.1
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 1.4e-48 197.2 171 62.0
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 2.7e-47 193.0 154 61.7
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 3.5e-47 192.6 131 67.9
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 3.5e-47 192.6 147 61.9
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 3.0e-46 189.5 142 64.1
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 3.9e-46 189.1 150 60.0
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 8.7e-46 188.0 154 61.0
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 1.2e-44 184.1 132 65.2
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-44 183.7 149 61.1
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 4.7e-44 182.2 190 53.2
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.0e-42 176.8 111 73.9
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 9.9e-42 174.5 130 64.6
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 1.7e-41 173.7 125 64.8
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 2.1e-39 166.8 146 58.2
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 4.6e-39 165.6 152 54.6
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 7.8e-39 164.9 140 59.3
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 2.3e-38 163.3 176 50.6
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.5e-37 160.6 170 53.5
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.5e-37 160.6 103 72.8
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 1.6e-36 157.1 124 62.1
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.6e-36 156.0 124 56.5
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 4.8e-36 155.6 106 66.0
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.8e-35 153.7 103 67.0
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.4e-35 153.3 211 42.7
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.0e-35 152.5 229 39.7
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 5.3e-35 152.1 198 51.5
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 6.9e-35 151.8 129 55.8
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 1.2e-34 151.0 97 76.3
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.2e-34 151.0 124 54.8
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 1.3e-33 147.5 141 55.3
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 4.9e-33 145.6 151 53.0
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 6.4e-33 145.2 127 50.4
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 1.6e-31 140.6 95 74.7
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.1e-31 140.2 229 38.4
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 6.0e-31 138.7 143 46.9
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 6.7e-30 135.2 92 72.8
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 2.5e-29 133.3 159 49.1
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 9.6e-29 131.3 112 57.1
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 2.1e-28 130.2 133 46.6
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 9.9e-26 121.3 152 48.7
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.2e-25 120.2 71 78.9
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 1.1e-24 117.9 89 70.8
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 2.4e-24 116.7 106 53.8
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 3.2e-24 116.3 80 73.8
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 3.2e-24 116.3 80 73.8
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 4.8e-20 102.4 110 44.5
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 4.8e-20 102.4 146 43.8
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 6.2e-20 102.1 125 44.0
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 3.4e-18 96.3 145 42.8
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 3.4e-18 96.3 120 45.0
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 4.5e-18 95.9 73 61.6
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 1.3e-17 94.4 158 43.0
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 1.6e-15 87.4 148 37.8
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 3.3e-13 79.7 76 50.0
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 5.7e-13 79.0 137 40.9
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.1e-11 74.7 112 41.1
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 3.1e-11 73.2 43 76.7
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 6.9e-11 72.0 51 68.6
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 2.0e-10 70.5 42 78.6
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 2.0e-10 70.5 51 74.5
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.4e-10 69.7 86 48.8
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 1.7e-09 67.4 50 68.0
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 5.0e-09 65.9 54 53.7


User provided reference genes

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