Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu023980.1 Olea europaea HOM05D002034 ORTHO05D004251 4.5e-291 1003.8 489 100.0
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 1.7e-117 427.2 369 60.4
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 3.9e-117 426.0 367 61.3
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 2.5e-116 423.3 363 61.7
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 5.6e-116 422.2 383 58.5
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 2.8e-115 419.9 386 59.3
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 3.6e-115 419.5 266 75.9
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 9.8e-113 411.4 373 58.4
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.3e-112 411.0 373 57.6
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 2.2e-112 410.2 367 59.9
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 3.7e-112 409.5 376 58.0
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 4.9e-112 409.1 362 60.5
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 2.4e-111 406.8 369 56.6
SGA_v2.0_scaffold62G21324 Striga asiatica HOM05D002034 ORTHO05D004251 2.4e-111 406.8 366 59.0
MSTRG.9115 Avicennia marina HOM05D002034 ORTHO05D004251 5.4e-111 405.6 366 58.7
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 1.6e-110 404.1 371 57.1
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 6.0e-110 402.1 371 57.4
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 7.8e-110 401.7 367 57.2
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 2.3e-109 400.2 373 58.2
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 2.3e-109 400.2 377 58.1
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 3.0e-109 399.8 364 59.6
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 6.6e-109 398.7 377 55.7
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 5.6e-108 395.6 392 56.4
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 1.2e-107 394.4 372 55.1
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 1.6e-107 394.0 396 53.0
Peaxi162Scf00808g00111 Petunia axillaris HOM05D002034 ORTHO05D004251 3.6e-107 392.9 372 56.7
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 8.1e-107 391.7 366 57.1
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 2.3e-106 390.2 372 55.9
CSS0027541 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 4.0e-106 389.4 245 77.6
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 5.2e-106 389.0 367 56.7
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 8.9e-106 388.3 368 57.6
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 1.2e-105 387.9 368 56.0
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 1.2e-105 387.9 375 56.5
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 1.5e-105 387.5 369 56.6
Lalb_Chr15g0083131 Lupinus albus HOM05D002034 ORTHO05D004251 3.4e-105 386.3 362 56.4
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 4.4e-105 386.0 370 56.2
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 7.6e-105 385.2 369 56.1
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 9.9e-105 384.8 369 54.5
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 4.9e-104 382.5 364 56.9
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 4.9e-104 382.5 364 56.9
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 1.1e-103 381.3 387 53.2
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 1.4e-103 380.9 361 56.5
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 3.2e-103 379.8 346 59.8
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 7.1e-103 378.6 368 56.0
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 1.2e-102 377.9 368 54.9
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 2.1e-102 377.1 366 54.1
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.7e-102 376.7 364 56.3
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 1.7e-101 374.0 373 53.1
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.3e-101 373.6 364 56.3
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 3.0e-101 373.2 370 54.9
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 3.9e-101 372.9 366 55.7
CiPaw.13G072000 Carya illinoinensis HOM05D002034 ORTHO05D004251 6.6e-101 372.1 305 59.7
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 1.5e-100 370.9 367 54.8
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 1.9e-100 370.5 370 55.4
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 1.9e-100 370.5 361 56.0
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 3.3e-100 369.8 368 54.3
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 5.6e-100 369.0 370 54.6
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 1.6e-99 367.5 343 58.0
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 3.6e-99 366.3 373 54.2
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 6.2e-99 365.5 373 53.9
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 8.1e-99 365.2 366 56.0
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 1.1e-98 364.8 362 56.1
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 1.1e-98 364.8 362 56.1
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 1.4e-98 364.4 356 55.9
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 1.8e-98 364.0 367 56.4
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 2.4e-98 363.6 368 51.9
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 2.4e-98 363.6 366 54.6
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 3.1e-98 363.2 373 53.4
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 5.2e-98 362.5 361 55.1
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 5.2e-98 362.5 368 53.0
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 8.9e-98 361.7 369 52.6
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 8.9e-98 361.7 388 51.8
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 8.9e-98 361.7 376 51.6
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 1.5e-97 360.9 370 52.4
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 2.6e-97 360.1 370 54.9
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 4.4e-97 359.4 374 54.3
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 4.4e-97 359.4 367 53.1
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 7.6e-97 358.6 366 51.4
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 1.7e-96 357.5 370 54.3
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 8.4e-96 355.1 374 54.0
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 8.4e-96 355.1 374 54.0
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.1e-95 354.8 403 49.1
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 1.9e-95 354.0 365 54.2
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 1.9e-95 354.0 398 50.8
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 1.9e-95 354.0 361 54.6
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 4.2e-95 352.8 367 53.7
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 1.2e-94 351.3 338 57.1
Cpa.g.sc2.386 Carica papaya HOM05D002034 ORTHO05D004251 1.2e-94 351.3 303 61.7
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 2.1e-94 350.5 369 52.0
Cfa011748 Carpinus fangiana HOM05D002034 ORTHO05D004251 2.1e-94 350.5 367 52.0
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 2.7e-94 350.1 368 52.7
CARHR272340 Cardamine hirsuta HOM05D002034 ORTHO05D004251 3.5e-94 349.7 297 58.6
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 4.6e-94 349.4 361 53.5
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 1.7e-93 347.4 366 52.2
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 9.6e-92 341.7 365 51.5
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 2.8e-91 340.1 361 54.3
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 3.1e-90 336.7 380 49.2
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 5.3e-90 335.9 371 49.1
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 6.9e-90 335.5 362 54.1
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 2.4e-87 327.0 387 48.8
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 2.7e-86 323.6 383 47.8
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 4.6e-86 322.8 370 48.9
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 2.3e-85 320.5 430 45.3
Hund18961 Selenicereus undatus HOM05D002034 ORTHO05D004251 1.9e-84 317.4 412 45.9
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 5.6e-84 315.8 367 48.0
SEGI_06649 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 6.0e-78 295.8 268 55.6
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 2.5e-76 290.4 372 45.4
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 9.6e-76 288.5 322 52.2
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.6e-70 271.2 379 43.5
PGSC0003DMG400030372 Solanum tuberosum HOM05D002034 ORTHO05D004251 3.7e-67 260.0 260 55.0
HPP92_012001 Vanilla planifolia HOM05D002034 ORTHO05D004251 6.9e-66 255.8 305 47.5
CSS0020954 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.2e-64 250.8 155 79.4
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 4.2e-63 246.5 183 68.3
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 2.5e-60 237.3 322 47.2
Mapoly0006s0080 Marchantia polymorpha HOM05D002034 ORTHO05D004251 1.6e-59 234.6 423 35.5
vmacro02935 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 2.2e-59 234.2 179 68.2
SMO141G0130 Selaginella moellendorffii HOM05D002034 ORTHO05D004251 3.1e-58 230.3 366 39.9
HPP92_012023 Vanilla planifolia HOM05D002034 ORTHO05D004251 1.7e-56 224.6 221 55.2
Pp3c22_21020 Physcomitrium patens HOM05D002034 ORTHO05D004251 3.9e-53 213.4 369 34.1
AagrBONN_evm.TU.Sc2ySwM_228.2653 Anthoceros agrestis HOM05D002034 ORTHO05D004251 2.6e-52 210.7 390 34.1
Pp3c20_20280 Physcomitrium patens HOM05D002034 ORTHO05D004251 2.8e-51 207.2 345 38.6
Pp3c20_20284 Physcomitrium patens HOM05D002034 ORTHO05D004251 2.8e-51 207.2 345 38.6
vmacro02934 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 4.1e-50 203.4 201 52.7
Ah.15g096260 Amaranthus hybridus HOM05D002034 ORTHO05D004251 2.5e-47 194.1 162 61.7
CBR_g32390 Chara braunii HOM05D002034 ORTHO05D004251 4.4e-44 183.3 252 41.7
Ah.15g096250 Amaranthus hybridus HOM05D002034 ORTHO05D004251 4.1e-42 176.8 198 48.5
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 2.0e-28 131.3 355 31.5
Lj1A128G36 Lonicera japonica HOM05D002034 ORTHO05D004251 4.8e-27 126.7 93 66.7
Lsat_1_v5_gn_6_89500 Lactuca sativa HOM05D002034 ORTHO05D004251 2.2e-24 117.9 126 52.4
Nitab4.5_0001469g0010 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.4e-21 108.6 153 41.8
Pp3c17_9080 Physcomitrium patens HOM05D002034 ORTHO05D004251 2.6e-20 104.4 167 39.5
VMungo0647G0969 Vigna mungo HOM05D002034 ORTHO05D004251 1.6e-17 95.1 91 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1890 Anthoceros agrestis HOM05D002034 ORTHO05D004251 4.9e-11 73.6 59 52.5
MCO07G130 Micromonas commoda HOM05D002034 ORTHO05D004251 4.1e-10 70.5 84 44.0
Actinidia14800 Actinidia chinensis HOM05D002034 ORTHO05D004251 1.3e-08 65.5 90 46.7
SMO358G0516 Selaginella moellendorffii HOM05D001434 ORTHO05D004586 6.6e-08 63.2 107 36.4
Pp3c20_12230 Physcomitrium patens HOM05D001434 ORTHO05D004586 4.3e-07 60.5 105 29.5
AagrBONN_evm.TU.Sc2ySwM_228.3056 Anthoceros agrestis HOM05D001434 ORTHO05D004586 9.5e-07 59.3 226 27.4
TWI38G0863 Tripterygium wilfordii HOM05D001434 ORTHO05D004586 2.1e-06 58.2 58 37.9
TPR.G1225 Trifolium pratense HOM05D001434 ORTHO05D004586 2.8e-06 57.8 83 39.8
Gohir.A04G013800 Gossypium hirsutum HOM05D001434 ORTHO05D004586 3.6e-06 57.4 58 39.7
Medtr5g093230 Medicago truncatula HOM05D001434 ORTHO05D004586 3.6e-06 57.4 83 39.8
TAR624G0691 Trochodendron aralioides HOM05D001434 ORTHO05D004586 4.7e-06 57.0 58 37.9
Medtr3g052790 Medicago truncatula HOM05D001434 ORTHO05D004586 6.2e-06 56.6 84 34.5
VMungo0647G2168 Vigna mungo HOM05D001434 ORTHO05D004586 6.2e-06 56.6 83 39.8
Cre04.g228000 Chlamydomonas reinhardtii HOM05D002034 ORTHO05D004251 8.0e-06 56.2 51 54.9


User provided reference genes

Program Settings