Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu022675.1 Olea europaea HOM05D003623 ORTHO05D004335 1.9e-83 312.4 152 100.0
SalBow2G2507 Salvia bowleyana HOM05D003623 ORTHO05D004335 1.0e-63 246.9 157 77.7
MSTRG.9774 Avicennia marina HOM05D003623 ORTHO05D004335 2.5e-62 242.3 155 77.4
Oeu002933.1 Olea europaea HOM05D003623 ORTHO05D004335 2.7e-61 238.8 151 75.5
MSTRG.4272 Avicennia marina HOM05D003623 ORTHO05D004335 3.6e-61 238.4 157 74.5
Sopen09g035770 Solanum pennellii HOM05D003623 ORTHO05D004335 4.8e-58 228.0 155 74.2
Nitab4.5_0002260g0250 Nicotiana tabacum HOM05D003623 ORTHO05D004335 8.2e-58 227.3 152 75.0
Nitab4.5_0003358g0040 Nicotiana tabacum HOM05D003623 ORTHO05D004335 8.2e-58 227.3 153 74.5
unitig_37.g12000 Utricularia gibba HOM05D003623 ORTHO05D004335 1.4e-57 226.5 157 70.7
Solyc09g097830.4 Solanum lycopersicum HOM05D003623 ORTHO05D004335 1.8e-57 226.1 155 73.5
CAN.G1310.13 Capsicum annuum HOM05D003623 ORTHO05D004335 4.1e-57 224.9 152 75.0
Nitab4.5_0000309g0320 Nicotiana tabacum HOM05D003623 ORTHO05D004335 9.0e-57 223.8 164 72.6
Solyc05g053835.2 Solanum lycopersicum HOM05D003623 ORTHO05D004335 2.9e-55 218.8 153 75.2
CAN.G2073.4 Capsicum annuum HOM05D003623 ORTHO05D004335 8.5e-55 217.2 155 73.5
Sopen05g032310 Solanum pennellii HOM05D003623 ORTHO05D004335 1.1e-54 216.9 153 74.5
Lj6A347G37 Lonicera japonica HOM05D003623 ORTHO05D004335 9.4e-54 213.8 145 74.5
CSS0034552 Camellia sinensis var. sinensis HOM05D003623 ORTHO05D004335 6.1e-53 211.1 164 67.7
CSS0050373 Camellia sinensis var. sinensis HOM05D003623 ORTHO05D004335 2.3e-52 209.1 163 68.1
Actinidia20848 Actinidia chinensis HOM05D003623 ORTHO05D004335 3.0e-52 208.8 161 67.1
Actinidia35820 Actinidia chinensis HOM05D003623 ORTHO05D004335 5.1e-52 208.0 166 65.7
Peaxi162Scf00423g00724 Petunia axillaris HOM05D003623 ORTHO05D004335 7.4e-51 204.1 149 73.2
Hma1.2p1_0984F.1_g244260 Hydrangea macrophylla HOM05D003623 ORTHO05D004335 1.7e-50 203.0 168 65.5
Nn8g41257 Nelumbo nucifera HOM05D003623 ORTHO05D004335 1.4e-49 199.9 157 65.6
Rhsim04G0132100 Rhododendron simsii HOM05D003623 ORTHO05D004335 1.4e-49 199.9 163 64.4
HanXRQChr01g0021981 Helianthus annuus HOM05D003623 ORTHO05D004335 2.4e-49 199.1 157 63.1
HanXRQChr14g0436771 Helianthus annuus HOM05D003623 ORTHO05D004335 3.1e-49 198.7 160 65.0
TAR633G0333 Trochodendron aralioides HOM05D003623 ORTHO05D004335 3.1e-49 198.7 149 65.8
Dinv10856 Davidia involucrata HOM05D003623 ORTHO05D004335 6.9e-49 197.6 158 63.3
Migut.G00821 Erythranthe guttata HOM05D003623 ORTHO05D004335 6.9e-49 197.6 147 70.1
Migut.G01152 Erythranthe guttata HOM05D003623 ORTHO05D004335 6.9e-49 197.6 147 70.1
Nn1g08118 Nelumbo nucifera HOM05D003623 ORTHO05D004335 6.9e-49 197.6 161 64.0
MBI07_g12178_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D004335 2.0e-48 196.1 163 60.7
Sc13g0000570 Simmondsia chinensis HOM05D003623 ORTHO05D004335 4.5e-48 194.9 180 57.8
DCAR_026670 Daucus carota HOM05D003623 ORTHO05D004335 5.9e-48 194.5 152 65.1
Dinv32173 Davidia involucrata HOM05D003623 ORTHO05D004335 5.9e-48 194.5 135 73.3
Cfa008669 Carpinus fangiana HOM05D003623 ORTHO05D004335 3.8e-47 191.8 162 62.3
Cc03_g09530 Coffea canephora HOM05D003623 ORTHO05D004335 6.5e-47 191.0 186 57.0
Hund19026 Selenicereus undatus HOM05D003623 ORTHO05D004335 8.5e-47 190.7 172 55.8
SGA_v2.0_scaffold102G29911 Striga asiatica HOM05D003623 ORTHO05D004335 8.5e-47 190.7 100 87.0
Aqoxy2G03998 Aquilegia oxysepala HOM05D003623 ORTHO05D004335 1.1e-46 190.3 166 61.4
FAN09G2957 Fragaria x ananassa HOM05D003623 ORTHO05D004335 1.4e-46 189.9 116 76.7
Thecc.04G190700 Theobroma cacao HOM05D003623 ORTHO05D004335 1.4e-46 189.9 163 62.6
GSVIVG01026359001 Vitis vinifera HOM05D003623 ORTHO05D004335 1.4e-46 189.9 154 61.0
FAN05G1824 Fragaria x ananassa HOM05D003623 ORTHO05D004335 2.5e-46 189.1 131 69.5
FAN05G2056 Fragaria x ananassa HOM05D003623 ORTHO05D004335 2.5e-46 189.1 131 69.5
Glyma.10G168700 Glycine max HOM05D003623 ORTHO05D004335 2.5e-46 189.1 100 85.0
FvH4_6g01310 Fragaria vesca HOM05D003623 ORTHO05D004335 4.2e-46 188.3 116 75.9
Glyma.20G221000 Glycine max HOM05D003623 ORTHO05D004335 4.2e-46 188.3 100 85.0
arahy.Tifrunner.gnm1.ann1.LG1RTX Arachis hypogaea HOM05D003623 ORTHO05D004335 5.5e-46 188.0 100 85.0
arahy.Tifrunner.gnm1.ann1.XW6TTL Arachis hypogaea HOM05D003623 ORTHO05D004335 5.5e-46 188.0 100 85.0
Lalb_Chr21g0311321 Lupinus albus HOM05D003623 ORTHO05D004335 5.5e-46 188.0 100 85.0
MD04G1235300 Malus domestica HOM05D003623 ORTHO05D004335 5.5e-46 188.0 117 76.1
Gohir.A10G130700 Gossypium hirsutum HOM05D003623 ORTHO05D004335 7.2e-46 187.6 110 76.4
CANSAT78G1699 Cannabis sativa HOM05D003623 ORTHO05D004335 9.4e-46 187.2 100 82.0
AUR62020880 Chenopodium quinoa HOM05D003623 ORTHO05D004335 9.4e-46 187.2 154 62.3
VMungo0720G0796 Vigna mungo HOM05D003623 ORTHO05D004335 9.4e-46 187.2 100 83.0
TPR.G31601 Trifolium pratense HOM05D003623 ORTHO05D004335 1.2e-45 186.8 156 60.3
Phvul.L002532 Phaseolus vulgaris HOM05D003623 ORTHO05D004335 1.6e-45 186.4 100 83.0
AUR62018537 Chenopodium quinoa HOM05D003623 ORTHO05D004335 2.1e-45 186.0 99 83.8
Gorai.011G150500 Gossypium raimondii HOM05D003623 ORTHO05D004335 2.1e-45 186.0 110 75.5
Medtr1g079510 Medicago truncatula HOM05D003623 ORTHO05D004335 2.7e-45 185.7 161 58.4
RcHm_v2.0_Chr3g0448861 Rosa chinensis HOM05D003623 ORTHO05D004335 2.7e-45 185.7 116 75.0
MD12G1253100 Malus domestica HOM05D003623 ORTHO05D004335 3.6e-45 185.3 151 61.6
FAN02G2773 Fragaria x ananassa HOM05D003623 ORTHO05D004335 4.7e-45 184.9 116 75.0
Ca_09980_v3 Cicer arietinum L. HOM05D003623 ORTHO05D004335 6.1e-45 184.5 100 82.0
Eucgr.L00641 Eucalyptus grandis HOM05D003623 ORTHO05D004335 1.4e-44 183.3 95 85.3
ATR0561G246 Amborella trichopoda HOM05D003623 ORTHO05D004335 3.0e-44 182.2 153 59.5
CANSAT54G1818 Cannabis sativa HOM05D003623 ORTHO05D004335 3.9e-44 181.8 154 60.4
Lj5g0011380 Lotus japonicus HOM05D003623 ORTHO05D004335 5.2e-44 181.4 157 59.2
Prupe.6G355200 Prunus persica HOM05D003623 ORTHO05D004335 5.2e-44 181.4 150 60.0
ECA238G2410 Erigeron canadensis HOM05D003623 ORTHO05D004335 6.7e-44 181.0 100 79.0
TAR362G0319 Trochodendron aralioides HOM05D003623 ORTHO05D004335 6.7e-44 181.0 130 65.4
Lsat_1_v5_gn_2_49120 Lactuca sativa HOM05D003623 ORTHO05D004335 1.5e-43 179.9 98 80.6
EL10Ac3g07439 Beta vulgaris HOM05D003623 ORTHO05D004335 2.0e-43 179.5 98 80.6
Gohir.A11G243000 Gossypium hirsutum HOM05D003623 ORTHO05D004335 2.6e-43 179.1 121 71.1
Gohir.A13G162400 Gossypium hirsutum HOM05D003623 ORTHO05D004335 2.6e-43 179.1 113 74.3
Gorai.013G189100 Gossypium raimondii HOM05D003623 ORTHO05D004335 2.6e-43 179.1 113 74.3
PSO017G5742 Papaver somniferum HOM05D003623 ORTHO05D004335 4.4e-43 178.3 160 60.0
Sc16g0010040 Simmondsia chinensis HOM05D003623 ORTHO05D004335 5.7e-43 177.9 136 63.2
Gohir.D13G171700 Gossypium hirsutum HOM05D003623 ORTHO05D004335 7.4e-43 177.6 113 73.5
Hund07163 Selenicereus undatus HOM05D003623 ORTHO05D004335 7.4e-43 177.6 102 78.4
PSO675G4779 Papaver somniferum HOM05D003623 ORTHO05D004335 9.7e-43 177.2 163 58.9
Sed0012930 Sechium edule HOM05D003623 ORTHO05D004335 9.7e-43 177.2 100 79.0
AUR62006999 Chenopodium quinoa HOM05D003623 ORTHO05D004335 1.7e-42 176.4 150 60.0
QL06p027608 Quercus lobata HOM05D003623 ORTHO05D004335 1.7e-42 176.4 98 80.6
CiPaw.01G112500 Carya illinoinensis HOM05D003623 ORTHO05D004335 2.2e-42 176.0 92 85.9
Gohir.D11G252600 Gossypium hirsutum HOM05D003623 ORTHO05D004335 2.2e-42 176.0 121 70.2
Gorai.007G271100 Gossypium raimondii HOM05D003623 ORTHO05D004335 2.2e-42 176.0 121 70.2
Haze_11688 Corylus avellana HOM05D003623 ORTHO05D004335 2.8e-42 175.6 186 54.8
Atru.chr2.1140 Acer truncatum HOM05D003623 ORTHO05D004335 3.7e-42 175.3 147 57.8
SEGI_12158 Sequoiadendron giganteum HOM05D003623 ORTHO05D004335 3.7e-42 175.3 95 81.1
Thecc.05G264600 Theobroma cacao HOM05D003623 ORTHO05D004335 4.8e-42 174.9 96 81.2
arahy.Tifrunner.gnm1.ann1.97NMUU Arachis hypogaea HOM05D003623 ORTHO05D004335 6.3e-42 174.5 100 77.0
Gohir.D10G135700 Gossypium hirsutum HOM05D003623 ORTHO05D004335 8.2e-42 174.1 92 82.6
arahy.Tifrunner.gnm1.ann1.3CZ4H2 Arachis hypogaea HOM05D003623 ORTHO05D004335 1.8e-41 172.9 101 76.2
Peaxi162Scf00286g00829 Petunia axillaris HOM05D003623 ORTHO05D004335 1.8e-41 172.9 85 89.4
Sabra19G0038000 Salix brachista HOM05D003623 ORTHO05D004335 4.1e-41 171.8 99 76.8
QL03p033428 Quercus lobata HOM05D003623 ORTHO05D004335 5.3e-41 171.4 117 70.9
Duzib177G0921 Durio zibethinus HOM05D003623 ORTHO05D004335 1.2e-40 170.2 99 75.8
Potri.013G051400 Populus trichocarpa HOM05D003623 ORTHO05D004335 1.6e-40 169.9 94 80.9
MELO3C010102.2 Cucumis melo HOM05D003623 ORTHO05D004335 2.0e-40 169.5 151 57.6
Sabra13G0046700 Salix brachista HOM05D003623 ORTHO05D004335 2.0e-40 169.5 94 80.9
CsaV3_1G045020 Cucumis sativus L. HOM05D003623 ORTHO05D004335 2.6e-40 169.1 151 57.6
Sp3g03150 Schrenkiella parvula HOM05D003623 ORTHO05D004335 2.6e-40 169.1 100 76.0
SEGI_21605 Sequoiadendron giganteum HOM05D000200 ORTHO05D000262 2.6e-40 169.1 100 74.0
BolC1t05759H Brassica oleracea HOM05D003623 ORTHO05D004335 3.5e-40 168.7 101 74.3
Zm00001eb241190 Zea mays HOM05D003623 ORTHO05D004335 3.5e-40 168.7 114 66.7
Manes.09G145400 Manihot esculenta HOM05D003623 ORTHO05D004335 4.5e-40 168.3 148 60.8
SEGI_32932 Sequoiadendron giganteum HOM05D003623 ORTHO05D004335 4.5e-40 168.3 96 77.1
A01p40930 Brassica napus HOM05D003623 ORTHO05D004335 1.0e-39 167.2 99 74.7
BNapus_Darmor_BZH_scaffold_78p00780 Brassica napus HOM05D003623 ORTHO05D004335 1.0e-39 167.2 99 74.7
BraA01t04529Z Brassica rapa HOM05D003623 ORTHO05D004335 1.0e-39 167.2 99 74.7
SEGI_03581 Sequoiadendron giganteum HOM05D000200 ORTHO05D000262 1.0e-39 167.2 99 73.7
Manes.08G142800 Manihot esculenta HOM05D003623 ORTHO05D004335 1.3e-39 166.8 121 66.9
vmacro00425 Vaccinium macrocarpon HOM05D003623 ORTHO05D004335 1.3e-39 166.8 98 76.5
BcaNung04816 Brassica carinata HOM05D003623 ORTHO05D004335 2.2e-39 166.0 100 73.0
Thhalv10019996m.g Eutrema salsugineum HOM05D003623 ORTHO05D004335 2.2e-39 166.0 99 74.7
PGSC0003DMG400015752 Solanum tuberosum HOM05D003623 ORTHO05D004335 2.2e-39 166.0 123 74.0
Potri.019G025600 Populus trichocarpa HOM05D003623 ORTHO05D004335 2.9e-39 165.6 154 56.5
Aa31LG5G14720 Aethionema arabicum HOM05D003623 ORTHO05D004335 5.0e-39 164.9 99 74.7
CARHR078390 Cardamine hirsuta HOM05D003623 ORTHO05D004335 5.0e-39 164.9 101 71.3
COL.COLO4_35966 Corchorus olitorius HOM05D003623 ORTHO05D004335 5.0e-39 164.9 101 75.2
ClCG03G011450 Citrullus lanatus HOM05D003623 ORTHO05D004335 6.5e-39 164.5 134 61.9
TWI60G1592 Tripterygium wilfordii HOM05D003623 ORTHO05D004335 6.5e-39 164.5 106 72.6
Carub.0003s0346 Capsella rubella HOM05D003623 ORTHO05D004335 1.5e-38 163.3 101 72.3
CDE05G1163 Ceratophyllum demersum HOM05D003623 ORTHO05D004335 1.5e-38 163.3 88 81.8
AL3G14190 Arabidopsis lyrata HOM05D003623 ORTHO05D004335 1.9e-38 162.9 101 71.3
AT3G04240 Arabidopsis thaliana HOM05D003623 ORTHO05D004335 1.9e-38 162.9 101 71.3
FAN14G1983 Fragaria x ananassa HOM05D003623 ORTHO05D004335 1.9e-38 162.9 101 75.2
Mapoly0034s0037 Marchantia polymorpha HOM05D003623 ORTHO05D004335 2.1e-37 159.5 146 55.5
TWI34G1961 Tripterygium wilfordii HOM05D003623 ORTHO05D004335 2.1e-37 159.5 93 76.3
Ciclev10018711m.g Citrus clementina HOM05D003623 ORTHO05D004335 2.7e-37 159.1 138 59.4
COL.COLO4_38177 Corchorus olitorius HOM05D003623 ORTHO05D004335 2.7e-37 159.1 90 77.8
Pp3c5_10370 Physcomitrium patens HOM05D003623 ORTHO05D004335 4.7e-37 158.3 133 57.9
HPP92_006960 Vanilla planifolia HOM05D003623 ORTHO05D004335 4.7e-37 158.3 98 69.4
Sabra19G0035000 Salix brachista HOM05D003623 ORTHO05D004335 1.0e-36 157.1 90 77.8
Ah.13g077780 Amaranthus hybridus HOM05D003623 ORTHO05D004335 1.4e-36 156.8 89 76.4
THA.LOC104820750 Tarenaya hassleriana HOM05D003623 ORTHO05D004335 2.0e-35 152.9 89 77.5
Duzib128G0757 Durio zibethinus HOM05D003623 ORTHO05D004335 1.8e-33 146.4 85 75.3
Aa31LG2G2050 Aethionema arabicum HOM05D003623 ORTHO05D004335 4.5e-32 141.7 99 63.6
Gorai.009G322900 Gossypium raimondii HOM05D003623 ORTHO05D004335 1.9e-30 136.3 121 59.5
Pp3c6_13940 Physcomitrium patens HOM05D003623 ORTHO05D004335 1.9e-30 136.3 87 67.8
THA.LOC104821603 Tarenaya hassleriana HOM05D003623 ORTHO05D004335 3.2e-30 135.6 114 57.0
CBR_g46307 Chara braunii HOM05D003623 ORTHO05D004335 7.2e-30 134.4 120 52.5
Gohir.D05G303601 Gossypium hirsutum HOM05D003623 ORTHO05D004335 1.6e-29 133.3 165 51.5
Cpa.g.sc51.46 Carica papaya HOM05D003623 ORTHO05D004335 2.7e-29 132.5 117 58.1
unitig_92.g28225 Utricularia gibba HOM05D003623 ORTHO05D004335 2.8e-21 105.9 59 78.0
CDE05G0087 Ceratophyllum demersum HOM05D003623 ORTHO05D004335 2.4e-17 92.8 46 84.8
SMO347G0623 Selaginella moellendorffii HOM05D003623 ORTHO05D004335 2.0e-16 89.7 46 80.4
AagrBONN_evm.TU.Sc2ySwM_117.2298 Anthoceros agrestis HOM05D003623 ORTHO05D004335 6.6e-15 84.7 44 79.5
Duzib151G0791 Durio zibethinus HOM05D003623 ORTHO05D004335 2.5e-14 82.8 111 49.5
PRCOL_00000371 Prasinoderma coloniale HOM05D003623 ORTHO05D004335 8.0e-13 77.8 102 39.2
Lsat_1_v5_gn_0_32500 Lactuca sativa HOM05D000651 ORTHO05D233741 1.3e-10 70.5 53 58.5
Haze_26630 Corylus avellana HOM05D003623 ORTHO05D004335 4.1e-09 65.5 96 31.2
AL6G20540 Arabidopsis lyrata HOM05D000868 ORTHO05D000711 7.3e-06 54.7 105 24.8
AT5G10090 Arabidopsis thaliana HOM05D000868 ORTHO05D000711 9.5e-06 54.3 105 24.8


User provided reference genes

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