Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu022509.1 Olea europaea HOM05D000337 ORTHO05D015534 2.5e-25 117.9 55 100.0
Oeu022510.1 Olea europaea HOM05D000337 ORTHO05D005067 5.1e-18 93.6 41 100.0
Oeu042586.1 Olea europaea HOM05D000337 ORTHO05D005067 2.6e-14 81.3 46 78.3
MSTRG.27168 Avicennia marina HOM05D000337 ORTHO05D005067 8.4e-13 76.3 46 71.7
MSTRG.8423 Avicennia marina HOM05D000337 ORTHO05D005067 1.4e-12 75.5 41 78.0
Migut.F00427 Erythranthe guttata HOM05D000337 ORTHO05D005067 1.4e-12 75.5 46 69.6
Duzib068G1245 Durio zibethinus HOM05D000337 ORTHO05D005067 9.3e-12 72.8 46 67.4
Peaxi162Scf01372g00043 Petunia axillaris HOM05D000337 ORTHO05D005067 9.3e-12 72.8 46 67.4
Hund11794 Selenicereus undatus HOM05D000337 ORTHO05D005067 1.2e-11 72.4 48 66.7
Solyc03g007120.3 Solanum lycopersicum HOM05D000337 ORTHO05D005067 1.2e-11 72.4 46 67.4
Sopen03g003110 Solanum pennellii HOM05D000337 ORTHO05D005067 1.2e-11 72.4 46 67.4
Dinv28532 Davidia involucrata HOM05D000337 ORTHO05D005067 1.6e-11 72.0 46 69.6
Gohir.A12G264000 Gossypium hirsutum HOM05D000337 ORTHO05D005067 1.6e-11 72.0 46 63.0
Gohir.D12G264200 Gossypium hirsutum HOM05D000337 ORTHO05D005067 2.1e-11 71.6 46 63.0
Thecc.03G161700 Theobroma cacao HOM05D000337 ORTHO05D005067 2.1e-11 71.6 45 66.7
FvH4_7g28200 Fragaria vesca HOM05D000337 ORTHO05D005067 2.7e-11 71.2 46 65.2
SGA_v2.0_scaffold2G01136 Striga asiatica HOM05D000337 ORTHO05D005067 2.7e-11 71.2 42 71.4
CAN.G1022.1 Capsicum annuum HOM05D000337 ORTHO05D005067 3.5e-11 70.9 46 65.2
AUR62016101 Chenopodium quinoa HOM05D000337 ORTHO05D005067 3.5e-11 70.9 44 70.5
AUR62016102 Chenopodium quinoa HOM05D000337 ORTHO05D005067 4.6e-11 70.5 44 68.2
Ciclev10004704m.g Citrus clementina HOM05D000337 ORTHO05D005067 4.6e-11 70.5 46 67.4
COL.COLO4_14182 Corchorus olitorius HOM05D000337 ORTHO05D005067 4.6e-11 70.5 46 63.0
AUR62043455 Chenopodium quinoa HOM05D000337 ORTHO05D005067 6.1e-11 70.1 42 71.4
FAN03G3387 Fragaria x ananassa HOM05D000337 ORTHO05D005067 6.1e-11 70.1 46 63.0
Gorai.008G283500 Gossypium raimondii HOM05D000337 ORTHO05D005067 6.1e-11 70.1 46 63.0
SalBow4G1388 Salvia bowleyana HOM05D000337 ORTHO05D005067 6.1e-11 70.1 41 73.2
AUR62035049 Chenopodium quinoa HOM05D000337 ORTHO05D005067 7.9e-11 69.7 44 68.2
AUR62043454 Chenopodium quinoa HOM05D000337 ORTHO05D005067 7.9e-11 69.7 44 68.2
Hma1.2p1_0099F.1_g048900 Hydrangea macrophylla HOM05D000337 ORTHO05D005067 7.9e-11 69.7 41 70.7
Nitab4.5_0000072g0350 Nicotiana tabacum HOM05D000337 ORTHO05D005067 7.9e-11 69.7 46 65.2
Sed0010454 Sechium edule HOM05D000337 ORTHO05D005067 7.9e-11 69.7 48 60.4
Ah.13g067390 Amaranthus hybridus HOM05D000337 ORTHO05D005067 1.0e-10 69.3 46 65.2
Duzib205G1439 Durio zibethinus HOM05D000337 ORTHO05D005067 1.0e-10 69.3 46 63.0
Nitab4.5_0006649g0010 Nicotiana tabacum HOM05D000337 ORTHO05D005067 1.0e-10 69.3 42 66.7
PGSC0003DMG400031026 Solanum tuberosum HOM05D000337 ORTHO05D005067 1.0e-10 69.3 46 65.2
VMungo0720G2641 Vigna mungo HOM05D000337 ORTHO05D005067 1.0e-10 69.3 37 78.4
Atru.chr1.632 Acer truncatum HOM05D000337 ORTHO05D005067 1.3e-10 68.9 46 65.2
Cpa.g.sc3.269 Carica papaya HOM05D000337 ORTHO05D005067 1.3e-10 68.9 46 63.0
ClCG05G022190 Citrullus lanatus HOM05D000337 ORTHO05D005067 1.3e-10 68.9 48 60.4
RcHm_v2.0_Chr1g0375151 Rosa chinensis HOM05D000337 ORTHO05D005067 1.3e-10 68.9 46 60.9
Sc19g0001850 Simmondsia chinensis HOM05D000337 ORTHO05D005067 1.3e-10 68.9 42 66.7
AT5G51640 Arabidopsis thaliana HOM05D000337 ORTHO05D005067 1.8e-10 68.6 45 62.2
CSS0027272 Camellia sinensis var. sinensis HOM05D000337 ORTHO05D005067 1.8e-10 68.6 46 63.0
CSS0032180 Camellia sinensis var. sinensis HOM05D000337 ORTHO05D005067 1.8e-10 68.6 46 63.0
CiPaw.03G097100 Carya illinoinensis HOM05D000337 ORTHO05D005067 1.8e-10 68.6 46 60.9
Cc09_g08790 Coffea canephora HOM05D000337 ORTHO05D005067 1.8e-10 68.6 37 75.7
FAN06G4803 Fragaria x ananassa HOM05D000504 ORTHO05D000403 1.8e-10 68.6 45 62.2
TWI14G1151 Tripterygium wilfordii HOM05D000337 ORTHO05D005067 1.8e-10 68.6 42 66.7
TWI39G0066 Tripterygium wilfordii HOM05D000337 ORTHO05D005067 1.8e-10 68.6 46 63.0
Thhalv10024876m.g Eutrema salsugineum HOM05D000337 ORTHO05D005067 2.3e-10 68.2 45 62.2
Glyma.10G178200 Glycine max HOM05D000337 ORTHO05D005067 2.3e-10 68.2 37 75.7
Glyma.20G212000 Glycine max HOM05D000337 ORTHO05D005067 2.3e-10 68.2 37 75.7
Phvul.007G111400 Phaseolus vulgaris HOM05D000337 ORTHO05D005067 2.3e-10 68.2 37 75.7
Gohir.D07G043700 Gossypium hirsutum HOM05D000337 ORTHO05D005067 3.9e-10 67.4 42 66.7
Gorai.001G046700 Gossypium raimondii HOM05D000337 ORTHO05D005067 3.9e-10 67.4 42 66.7
MD07G1258100 Malus domestica HOM05D000337 ORTHO05D005067 3.9e-10 67.4 41 68.3
Manes.14G033000 Manihot esculenta HOM05D000337 ORTHO05D005067 3.9e-10 67.4 41 68.3
PGR142G2566 Punica granatum HOM05D000337 ORTHO05D005067 3.9e-10 67.4 40 70.0
Sabra12G0097600 Salix brachista HOM05D000337 ORTHO05D005067 3.9e-10 67.4 44 63.6
ATR0626G084 Amborella trichopoda HOM05D000337 ORTHO05D005067 5.1e-10 67.0 37 73.0
CDE09G0813 Ceratophyllum demersum HOM05D000363 ORTHO05D005067 5.1e-10 67.0 39 69.2
Duzib084G0306 Durio zibethinus HOM05D000337 ORTHO05D005067 5.1e-10 67.0 41 65.9
PSO170G1740 Papaver somniferum HOM05D000337 ORTHO05D005067 5.1e-10 67.0 39 69.2
Sabra15G0144600 Salix brachista HOM05D000337 ORTHO05D005067 5.1e-10 67.0 48 58.3
Actinidia25039 Actinidia chinensis HOM05D000337 ORTHO05D005067 6.7e-10 66.6 43 62.8
MELO3C012303.2 Cucumis melo HOM05D000337 ORTHO05D005067 8.7e-10 66.2 48 58.3
DCAR_020222 Daucus carota HOM05D000337 ORTHO05D015534 8.7e-10 66.2 44 56.8
FAN03G2257 Fragaria x ananassa HOM05D000504 ORTHO05D000403 8.7e-10 66.2 42 64.3
Lj5g0024374 Lotus japonicus HOM05D000337 ORTHO05D005067 8.7e-10 66.2 42 64.3
Lalb_Chr02g0149951 Lupinus albus HOM05D000337 ORTHO05D005067 8.7e-10 66.2 38 71.1
Potri.015G131600 Populus trichocarpa HOM05D000337 ORTHO05D005067 8.7e-10 66.2 44 61.4
Prupe.2G282500 Prunus persica HOM05D000337 ORTHO05D005067 8.7e-10 66.2 41 65.9
Sed0003474 Sechium edule HOM05D000337 ORTHO05D005067 8.7e-10 66.2 48 58.3
TAR381G1244 Trochodendron aralioides HOM05D000337 ORTHO05D005067 8.7e-10 66.2 46 58.7
arahy.Tifrunner.gnm1.ann1.I7AZF3 Arachis hypogaea HOM05D000337 ORTHO05D005067 1.1e-09 65.9 37 73.0
EL10Ac3g05792 Beta vulgaris HOM05D000337 ORTHO05D005067 1.1e-09 65.9 37 73.0
Carub.0007s1565 Capsella rubella HOM05D000337 ORTHO05D005067 1.1e-09 65.9 45 60.0
Manes.06G138100 Manihot esculenta HOM05D000337 ORTHO05D005067 1.1e-09 65.9 42 64.3
Medtr6g061710 Medicago truncatula HOM05D000337 ORTHO05D005067 1.1e-09 65.9 38 65.8
Potri.012G129700 Populus trichocarpa HOM05D000337 ORTHO05D005067 1.1e-09 65.9 44 61.4
Sp7g23380 Schrenkiella parvula HOM05D000337 ORTHO05D015534 1.1e-09 65.9 47 63.8
vmacro09886 Vaccinium macrocarpon HOM05D000337 ORTHO05D005067 1.1e-09 65.9 37 73.0
Ca_26394_v3 Cicer arietinum L. HOM05D000337 ORTHO05D005067 1.5e-09 65.5 38 65.8
Ca_29799_v3 Cicer arietinum L. HOM05D000337 ORTHO05D005067 1.5e-09 65.5 38 65.8
Lalb_Chr21g0311891 Lupinus albus HOM05D000337 ORTHO05D005067 1.5e-09 65.5 38 68.4
Rhsim09G0193600 Rhododendron simsii HOM05D000337 ORTHO05D005067 1.5e-09 65.5 37 73.0
Hund04639 Selenicereus undatus HOM05D000337 ORTHO05D005067 1.5e-09 65.5 37 73.0
AL8G25890 Arabidopsis lyrata HOM05D000337 ORTHO05D005067 1.9e-09 65.1 45 57.8
Haze_13823 Corylus avellana HOM05D000337 ORTHO05D005067 1.9e-09 65.1 37 70.3
Lsat_1_v5_gn_8_8140 Lactuca sativa HOM05D000337 ORTHO05D005067 1.9e-09 65.1 37 73.0
Nn5g27454 Nelumbo nucifera HOM05D000337 ORTHO05D005067 1.9e-09 65.1 38 68.4
QL12p039478 Quercus lobata HOM05D000337 ORTHO05D005067 1.9e-09 65.1 45 57.8
GSVIVG01018511001 Vitis vinifera HOM05D000337 ORTHO05D005067 1.9e-09 65.1 34 76.5
Actinidia13553 Actinidia chinensis HOM05D000337 ORTHO05D005067 2.5e-09 64.7 46 60.9
AL7G27770 Arabidopsis lyrata HOM05D000337 ORTHO05D005067 2.5e-09 64.7 45 60.0
Lsat_1_v5_gn_2_93981 Lactuca sativa HOM05D006190 ORTHO05D008260 2.5e-09 64.7 37 73.0
Lj1A984T88 Lonicera japonica HOM05D000337 ORTHO05D005067 2.5e-09 64.7 42 64.3
Medtr1g076690 Medicago truncatula HOM05D000337 ORTHO05D005067 2.5e-09 64.7 37 70.3
Psat6g112640 Pisum sativum HOM05D000337 ORTHO05D005067 2.5e-09 64.7 37 70.3
TPR.G16616 Trifolium pratense HOM05D000337 ORTHO05D005067 2.5e-09 64.7 37 70.3
Aa31LG3G8080 Aethionema arabicum HOM05D000337 ORTHO05D005067 3.3e-09 64.3 40 65.0
Aqoxy5G02473 Aquilegia oxysepala HOM05D000337 ORTHO05D005067 3.3e-09 64.3 37 70.3
CARHR232770 Cardamine hirsuta HOM05D000337 ORTHO05D005067 3.3e-09 64.3 37 70.3
Eucgr.K00144 Eucalyptus grandis HOM05D000337 ORTHO05D005067 3.3e-09 64.3 38 71.1
Hund04640 Selenicereus undatus HOM05D000337 ORTHO05D005067 3.3e-09 64.3 37 70.3
SEGI_11488 Sequoiadendron giganteum HOM05D000337 ORTHO05D005067 3.3e-09 64.3 38 65.8
CsaV3_5G034930 Cucumis sativus L. HOM05D000337 ORTHO05D005067 4.3e-09 63.9 48 56.2
HanXRQChr05g0141391 Helianthus annuus HOM05D000337 ORTHO05D005067 4.3e-09 63.9 39 66.7
Lj2g0001055 Lotus japonicus HOM05D000337 ORTHO05D005067 4.3e-09 63.9 32 75.0
Lalb_Chr06g0168921 Lupinus albus HOM05D000337 ORTHO05D005067 4.3e-09 63.9 38 68.4
Ah.07g208280 Amaranthus hybridus HOM05D000337 ORTHO05D005067 5.7e-09 63.5 45 55.6
BcaC09g50785 Brassica carinata HOM05D000337 ORTHO05D005067 5.7e-09 63.5 41 63.4
C01p20870 Brassica napus HOM05D000337 ORTHO05D005067 5.7e-09 63.5 41 63.4
BolC1t02014H Brassica oleracea HOM05D000337 ORTHO05D005067 5.7e-09 63.5 41 63.4
CARHR264410 Cardamine hirsuta HOM05D000337 ORTHO05D005067 5.7e-09 63.5 37 67.6
Cc02_g03880 Coffea canephora HOM05D000337 ORTHO05D005067 5.7e-09 63.5 36 69.4
DCAR_018127 Daucus carota HOM05D000337 ORTHO05D005067 5.7e-09 63.5 32 78.1
arahy.Tifrunner.gnm1.ann1.68Z3SV Arachis hypogaea HOM05D000337 ORTHO05D005067 7.4e-09 63.2 32 75.0
arahy.Tifrunner.gnm1.ann1.B3RUP4 Arachis hypogaea HOM05D000337 ORTHO05D005067 7.4e-09 63.2 32 75.0
arahy.Tifrunner.gnm1.ann1.NLN73P Arachis hypogaea HOM05D000337 ORTHO05D005067 7.4e-09 63.2 32 75.0
MD01G1185900 Malus domestica HOM05D000337 ORTHO05D005067 7.4e-09 63.2 32 78.1
Psat1g111400 Pisum sativum HOM05D000337 ORTHO05D005067 7.4e-09 63.2 36 66.7
A03p55930 Brassica napus HOM05D000337 ORTHO05D005067 9.7e-09 62.8 41 61.0
BolC7t45909H Brassica oleracea HOM05D000337 ORTHO05D005067 9.7e-09 62.8 41 61.0
BraA03t14664Z Brassica rapa HOM05D000337 ORTHO05D005067 9.7e-09 62.8 41 61.0
Hma1.2p1_0099F.1_g048860 Hydrangea macrophylla HOM05D000337 ORTHO05D005067 9.7e-09 62.8 40 60.0
Lj8A36G59 Lonicera japonica HOM05D000337 ORTHO05D005067 9.7e-09 62.8 41 63.4
Os01g0914800 Oryza sativa ssp. japonica HOM05D000337 ORTHO05D005067 9.7e-09 62.8 32 78.1
Ca_09891_v3 Cicer arietinum L. HOM05D000337 ORTHO05D005067 1.3e-08 62.4 37 67.6
HanXRQChr08g0224031 Helianthus annuus HOM05D000337 ORTHO05D005067 1.3e-08 62.4 37 67.6
Rhsim03G0171500 Rhododendron simsii HOM05D000337 ORTHO05D005067 1.3e-08 62.4 37 67.6
ECA233G3579 Erigeron canadensis HOM05D000337 ORTHO05D005067 1.6e-08 62.0 37 64.9
AT4G25360 Arabidopsis thaliana HOM05D000337 ORTHO05D005067 2.2e-08 61.6 36 69.4
BcaNung03687 Brassica carinata HOM05D000337 ORTHO05D005067 2.2e-08 61.6 36 69.4
A01p16650 Brassica napus HOM05D000337 ORTHO05D005067 2.2e-08 61.6 36 69.4
BraA01t01619Z Brassica rapa HOM05D000337 ORTHO05D005067 2.2e-08 61.6 36 69.4
Hund04641 Selenicereus undatus HOM05D000337 ORTHO05D005067 2.2e-08 61.6 36 69.4
Zm00001eb364910 Zea mays HOM05D000337 ORTHO05D005067 2.2e-08 61.6 32 75.0
BcaB05g23996 Brassica carinata HOM05D000337 ORTHO05D005067 3.7e-08 60.8 36 66.7
BcaC03g14587 Brassica carinata HOM05D000337 ORTHO05D005067 3.7e-08 60.8 36 66.7
A02p12200 Brassica napus HOM05D000337 ORTHO05D005067 3.7e-08 60.8 36 66.7
C02p20310 Brassica napus HOM05D000337 ORTHO05D005067 3.7e-08 60.8 36 66.7
BolC2t08165H Brassica oleracea HOM05D000337 ORTHO05D005067 3.7e-08 60.8 36 66.7
BraA02t06285Z Brassica rapa HOM05D000337 ORTHO05D005067 3.7e-08 60.8 36 66.7
Thhalv10013411m.g Eutrema salsugineum HOM05D000337 ORTHO05D005067 3.7e-08 60.8 36 66.7
Sp6g13850 Schrenkiella parvula HOM05D000337 ORTHO05D005067 3.7e-08 60.8 36 66.7
THA.LOC104811508 Tarenaya hassleriana HOM05D000337 ORTHO05D005067 3.7e-08 60.8 35 71.4
Hma1.2p1_0654F.1_g196390 Hydrangea macrophylla HOM05D000337 ORTHO05D005067 6.3e-08 60.1 35 68.6
Rhsim03G0163300 Rhododendron simsii HOM05D000337 ORTHO05D005067 8.2e-08 59.7 38 63.2
Pp3c1_40460 Physcomitrium patens HOM05D000337 ORTHO05D005067 1.4e-07 58.9 37 56.8
HPP92_026250 Vanilla planifolia HOM05D000337 ORTHO05D005067 5.3e-07 57.0 37 62.2
Ah.07g208290 Amaranthus hybridus HOM05D000337 ORTHO05D005067 6.9e-07 56.6 33 63.6
Ah.13g067400 Amaranthus hybridus HOM05D000337 ORTHO05D005067 9.0e-07 56.2 31 74.2
Mapoly0002s0044 Marchantia polymorpha HOM05D000337 ORTHO05D005067 1.2e-06 55.8 36 63.9
AagrBONN_evm.TU.Sc2ySwM_344.1037 Anthoceros agrestis HOM05D000337 ORTHO05D005067 2.0e-06 55.1 32 65.6
FAN10G0393 Fragaria x ananassa HOM05D000337 ORTHO05D005067 4.5e-06 53.9 39 46.2
arahy.Tifrunner.gnm1.ann1.D2VJYT Arachis hypogaea HOM05D000337 ORTHO05D005067 5.9e-06 53.5 29 75.9
DCAR_014611 Daucus carota HOM05D000337 ORTHO05D005067 5.9e-06 53.5 38 65.8
DCAR_022679 Daucus carota HOM05D000337 ORTHO05D015534 5.9e-06 53.5 38 65.8


User provided reference genes

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