Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 2.6e-124 448.7 225 100.0
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 1.1e-69 267.3 208 66.3
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.2e-65 253.8 219 60.3
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 4.3e-63 245.4 196 62.8
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 9.6e-63 244.2 239 58.6
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 5.8e-60 235.0 205 57.6
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 5.8e-60 235.0 195 64.6
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 9.9e-60 234.2 212 57.5
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.3e-59 233.8 242 55.0
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.2e-59 233.0 179 66.5
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.1e-58 230.7 200 60.5
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 1.9e-58 229.9 206 56.8
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 2.4e-58 229.6 178 63.5
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 3.2e-58 229.2 212 58.0
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 1.6e-57 226.9 235 51.9
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 2.1e-57 226.5 219 56.2
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 4.6e-57 225.3 179 63.1
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.0e-56 224.2 192 62.0
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 2.3e-56 223.0 171 61.4
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 1.9e-55 219.9 178 60.7
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 1.6e-54 216.9 194 55.7
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 3.6e-54 215.7 208 53.8
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 4.8e-54 215.3 216 56.9
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 8.1e-54 214.5 196 54.6
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 1.4e-53 213.8 236 53.8
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.0e-53 212.2 180 59.4
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 4.0e-53 212.2 180 59.4
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 4.0e-53 212.2 179 59.2
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 5.3e-53 211.8 177 57.1
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 6.9e-53 211.5 169 61.5
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.2e-52 210.7 196 60.2
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 2.0e-52 209.9 180 58.3
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 9.9e-52 207.6 200 56.5
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.3e-51 207.2 196 58.2
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.7e-51 206.8 180 58.3
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 2.9e-51 206.1 181 54.7
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 3.8e-51 205.7 233 51.1
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 4.9e-51 205.3 212 51.9
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 8.4e-51 204.5 231 48.9
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 1.1e-50 204.1 180 56.7
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 1.4e-50 203.8 180 57.2
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.9e-50 203.4 212 48.1
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 2.4e-50 203.0 203 52.2
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 2.4e-50 203.0 139 76.3
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 2.4e-50 203.0 196 57.1
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 2.4e-50 203.0 197 53.3
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 3.2e-50 202.6 203 52.2
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 7.1e-50 201.4 206 51.0
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 9.3e-50 201.1 158 62.7
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 9.3e-50 201.1 190 55.8
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.6e-49 200.3 178 57.3
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 1.6e-49 200.3 217 50.7
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 6.0e-49 198.4 216 49.1
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 7.9e-49 198.0 183 56.3
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 2.3e-48 196.4 187 51.3
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 2.3e-48 196.4 186 56.5
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 8.7e-48 194.5 181 54.7
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 8.7e-48 194.5 200 52.0
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.1e-47 194.1 211 53.6
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 2.5e-47 193.0 191 48.7
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 5.6e-47 191.8 195 54.9
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 2.1e-46 189.9 194 51.5
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 2.8e-46 189.5 200 48.0
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 3.7e-46 189.1 216 45.8
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 4.8e-46 188.7 178 53.9
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.1e-45 187.6 190 53.2
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 5.3e-45 185.3 192 49.0
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 6.9e-45 184.9 182 54.9
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 1.5e-44 183.7 193 49.2
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 3.4e-44 182.6 217 43.8
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 4.5e-44 182.2 193 47.2
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 4.5e-44 182.2 198 47.5
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 1.0e-43 181.0 182 49.5
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 1.3e-43 180.6 205 47.3
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 1.3e-43 180.6 205 47.3
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 1.7e-43 180.3 192 51.0
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 1.7e-43 180.3 205 49.8
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 2.2e-43 179.9 183 49.7
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.2e-43 179.9 234 44.4
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 2.9e-43 179.5 205 46.8
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 2.9e-43 179.5 205 46.8
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 2.9e-43 179.5 205 46.8
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 3.8e-43 179.1 182 50.0
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 1.9e-42 176.8 198 48.5
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 2.5e-42 176.4 173 47.4
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 3.2e-42 176.0 217 42.9
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 3.2e-42 176.0 167 52.7
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 9.3e-42 174.5 178 48.9
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 2.1e-41 173.3 171 50.9
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 2.1e-41 173.3 171 50.3
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 3.5e-41 172.6 172 52.3
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 6.0e-41 171.8 177 49.7
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 7.9e-41 171.4 185 50.3
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 1.3e-40 170.6 199 46.7
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 1.8e-40 170.2 230 42.6
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 6.7e-40 168.3 207 47.3
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 6.7e-40 168.3 209 44.5
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 8.7e-40 167.9 204 45.6
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.5e-39 167.2 171 48.5
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 9.6e-39 164.5 195 48.7
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 6.3e-38 161.8 195 47.7
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.4e-37 160.6 202 45.5
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 2.4e-37 159.8 207 45.4
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 1.2e-36 157.5 166 47.0
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 4.5e-36 155.6 174 43.7
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 2.9e-35 152.9 144 52.1
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.1e-34 151.0 223 40.8
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 1.9e-34 150.2 105 66.7
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 5.5e-34 148.7 186 40.3
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 1.6e-33 147.1 143 55.2
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 2.1e-33 146.7 153 50.3
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 2.1e-33 146.7 222 41.0
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 6.1e-33 145.2 174 46.0
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 7.9e-33 144.8 184 44.6
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 1.5e-31 140.6 100 61.0
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 5.7e-31 138.7 209 36.8
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.3e-30 137.5 202 38.1
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 1.3e-30 137.5 166 41.6
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 2.8e-30 136.3 323 32.8
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 1.8e-29 133.7 158 41.8
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 3.1e-29 132.9 205 36.6
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 5.3e-29 132.1 180 44.4
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 9.0e-29 131.3 151 46.4
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.5e-28 130.6 177 40.1
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.0e-28 130.2 177 40.1
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 2.2e-27 126.7 130 46.9
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 3.8e-27 125.9 215 40.5
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 6.5e-27 125.2 216 36.6
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 6.5e-27 125.2 204 41.2
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 4.2e-26 122.5 168 45.2
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.2e-25 120.9 180 38.9
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 1.4e-24 117.5 126 44.4
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 5.1e-24 115.5 195 36.4
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.5e-23 114.0 190 38.4
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 1.5e-23 114.0 196 40.3
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 2.0e-23 113.6 101 50.5
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 5.7e-23 112.1 146 40.4
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 2.8e-22 109.8 139 43.2
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 3.7e-22 109.4 94 51.1
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 5.3e-21 105.5 101 52.5
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 6.9e-21 105.1 204 33.8
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 1.2e-20 104.4 320 29.1
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.4e-18 97.4 69 62.3
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 4.2e-18 95.9 207 31.4
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 1.2e-17 94.4 94 45.7
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.2e-17 94.4 168 32.7
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 2.1e-17 93.6 69 69.6
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 8.8e-16 88.2 140 39.3
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 2.2e-14 83.6 133 33.8
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 2.4e-13 80.1 291 26.1
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 9.1e-13 78.2 118 39.8
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.0e-11 74.7 61 62.3
CBR_g17049 Chara braunii HOM05D068249 ORTHO05D005712 1.4e-08 64.3 225 25.8
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 4.0e-08 62.8 134 32.8
TAR626G0405 Trochodendron aralioides HOM05D000010 ORTHO05D016350 1.7e-06 57.4 39 61.5


User provided reference genes

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