Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 4.7e-169 597.8 308 100.0
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 7.9e-84 314.7 307 56.7
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 5.7e-82 308.5 307 57.0
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 5.7e-82 308.5 311 56.6
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 5.7e-82 308.5 308 56.2
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 7.4e-82 308.1 306 58.2
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 9.7e-82 307.8 308 56.2
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 1.3e-81 307.4 308 55.8
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 2.4e-80 303.1 307 57.0
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 4.5e-79 298.9 308 55.2
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 4.5e-79 298.9 299 55.9
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 7.7e-79 298.1 308 56.2
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 7.7e-79 298.1 301 55.5
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 7.7e-79 298.1 301 55.5
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 1.7e-78 297.0 307 55.0
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 1.7e-78 297.0 292 57.2
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 2.2e-78 296.6 292 58.6
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 2.2e-78 296.6 307 53.7
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 2.9e-78 296.2 307 55.0
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 3.8e-78 295.8 299 56.5
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 6.5e-78 295.0 307 55.0
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 6.5e-78 295.0 294 55.8
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 6.5e-78 295.0 307 56.4
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.1e-77 294.3 294 55.8
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.2e-77 292.7 307 55.4
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 5.5e-77 292.0 295 56.9
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 5.5e-77 292.0 307 54.4
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.6e-76 290.4 308 53.9
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 2.1e-76 290.0 307 55.0
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 2.7e-76 289.7 305 54.8
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 3.6e-76 289.3 307 55.0
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 4.6e-76 288.9 299 54.8
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 6.1e-76 288.5 289 56.4
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 1.0e-75 287.7 306 55.9
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 1.4e-75 287.3 316 54.7
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 2.3e-75 286.6 321 51.7
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 3.9e-75 285.8 289 56.1
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 3.9e-75 285.8 307 51.8
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 1.1e-74 284.3 289 55.7
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 1.1e-74 284.3 309 54.4
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 2.0e-74 283.5 306 55.6
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 2.5e-74 283.1 308 54.9
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 3.3e-74 282.7 308 52.9
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.3e-74 282.7 311 52.7
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 4.3e-74 282.3 307 53.4
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 4.3e-74 282.3 302 54.3
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 7.4e-74 281.6 298 54.7
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 1.3e-73 280.8 304 54.3
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 2.8e-73 279.6 308 52.3
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 3.7e-73 279.3 307 54.4
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 8.2e-73 278.1 305 53.1
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 1.4e-72 277.3 306 52.6
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 1.4e-72 277.3 303 53.5
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 1.4e-72 277.3 306 52.0
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 3.1e-72 276.2 327 51.7
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 3.1e-72 276.2 307 51.8
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 3.1e-72 276.2 308 51.3
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 5.3e-72 275.4 327 51.7
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 5.3e-72 275.4 296 53.7
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 5.3e-72 275.4 295 52.9
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 9.1e-72 274.6 271 55.7
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 9.1e-72 274.6 307 52.4
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 1.2e-71 274.2 300 52.7
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 2.0e-71 273.5 305 50.5
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 2.6e-71 273.1 295 53.6
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 3.4e-71 272.7 304 52.6
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 4.5e-71 272.3 302 52.0
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 5.9e-71 271.9 286 54.5
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.3e-70 270.8 308 53.2
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 3.8e-70 269.2 301 51.5
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 3.8e-70 269.2 308 51.9
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 3.2e-69 266.2 298 52.0
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 9.4e-69 264.6 299 50.5
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 1.2e-68 264.2 295 52.9
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 6.1e-68 261.9 301 49.8
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.0e-67 261.2 298 50.7
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 2.3e-67 260.0 306 48.7
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 3.0e-67 259.6 306 48.0
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 1.5e-66 257.3 306 47.7
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 1.5e-66 257.3 306 48.7
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 1.5e-66 257.3 306 48.7
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 2.0e-66 256.9 310 48.1
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 2.6e-66 256.5 295 48.1
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 3.7e-65 252.7 305 47.9
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 3.7e-65 252.7 321 47.0
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 6.3e-65 251.9 306 47.1
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 8.2e-65 251.5 311 46.6
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 8.2e-65 251.5 311 46.6
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 1.1e-64 251.1 318 46.2
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 2.4e-64 250.0 306 48.0
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 2.4e-64 250.0 306 50.7
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 4.1e-64 249.2 297 48.8
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 7.0e-64 248.4 272 51.1
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 7.0e-64 248.4 300 51.0
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 7.0e-64 248.4 301 50.8
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 1.2e-63 247.7 296 45.9
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 4.5e-63 245.7 306 46.7
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 1.3e-62 244.2 306 47.1
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 2.9e-62 243.0 301 48.8
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 3.8e-62 242.7 188 65.4
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 6.5e-62 241.9 270 52.6
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 8.5e-62 241.5 316 45.3
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 5.5e-61 238.8 305 46.9
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 2.7e-60 236.5 263 48.7
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 2.7e-60 236.5 213 59.2
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.6e-60 236.1 185 67.6
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 6.1e-60 235.3 306 45.1
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 3.0e-59 233.0 294 47.6
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 3.9e-59 232.6 263 48.3
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 5.2e-59 232.3 292 48.3
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 1.5e-58 230.7 271 47.2
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 2.0e-58 230.3 309 46.0
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 7.4e-58 228.4 334 44.3
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 2.8e-57 226.5 299 47.2
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 5.3e-56 222.2 311 45.7
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 7.7e-55 218.4 321 45.2
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 6.5e-54 215.3 306 44.1
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 3.7e-49 199.5 188 52.7
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 7.7e-47 191.8 309 40.8
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 3.8e-46 189.5 309 37.9
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 3.8e-46 189.5 175 58.9
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 3.8e-46 189.5 175 58.9
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 2.3e-43 180.3 214 51.4
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 5.7e-42 175.6 304 38.8
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 8.0e-36 155.2 303 34.0
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 6.3e-33 145.6 379 33.2
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 5.4e-32 142.5 222 42.3
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 1.3e-30 137.9 178 48.9
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 1.2e-23 114.8 144 51.4
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 2.8e-20 103.6 172 40.7
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 4.9e-17 92.8 67 70.1
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 1.2e-15 88.2 71 64.8
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 6.0e-15 85.9 110 50.0
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 2.5e-13 80.5 152 36.2
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 4.0e-11 73.2 66 59.1
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 7.5e-10 68.9 67 58.2
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.1e-08 65.1 146 32.9
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.1e-08 65.1 60 53.3
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 2.4e-08 63.9 151 33.1
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.6e-07 61.2 145 34.5


User provided reference genes

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