Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 4238.0 2141 100.0
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2681.0 2053 70.7
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2603.5 2095 67.5
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2588.9 2058 67.5
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2587.4 2050 68.3
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2489.9 2070 65.2
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2483.8 2066 65.3
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2468.0 2061 65.5
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2459.1 2084 64.5
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2436.0 2063 64.5
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2427.5 2060 64.6
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2420.6 2067 64.4
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2407.5 2111 62.5
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2399.0 2069 63.8
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2380.1 2063 62.9
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2350.1 2063 62.7
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2348.9 2208 60.1
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 2345.9 2231 60.0
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2333.9 2067 61.9
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2331.2 2065 61.8
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2320.4 2069 61.8
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2314.7 2071 61.0
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2314.7 2063 61.7
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2307.3 2062 61.0
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2303.9 2042 61.8
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2302.3 2071 61.3
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2296.9 2045 61.6
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2290.0 2065 61.4
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 2286.5 2059 61.6
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2284.6 2067 61.0
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2284.2 2065 61.0
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2283.1 2057 61.2
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2281.9 2065 61.0
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2276.1 1890 65.4
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2273.8 2064 61.0
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2271.1 2063 60.4
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2268.4 2064 61.0
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2264.6 2061 60.4
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2260.3 2094 61.2
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2240.3 2094 60.0
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2232.6 2138 58.8
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2227.2 2061 59.9
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2225.3 2068 59.6
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 2220.7 2068 60.4
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 2211.0 2077 60.2
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2204.5 2066 60.1
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2197.5 2059 59.6
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2193.3 2060 60.1
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2184.1 2055 60.0
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 2183.3 2065 58.9
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2181.4 2052 59.7
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 2179.4 2063 59.2
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2177.5 2056 59.4
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 2175.2 1957 61.1
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2174.1 2044 57.8
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2169.8 2097 58.1
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2161.3 2178 57.2
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 2134.0 2068 58.5
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2129.8 2079 58.4
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2125.1 1829 62.8
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2117.0 1718 66.9
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2109.0 2068 58.6
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2106.6 2094 55.9
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2105.5 2063 56.9
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2091.2 2152 56.5
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2083.9 2063 57.9
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2067.0 2060 55.1
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2035.0 2044 56.7
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 2020.0 1792 61.7
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 2012.7 1964 58.9
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2008.0 2052 55.2
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1999.9 2079 56.6
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 1994.5 2052 55.2
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 1990.7 2049 55.1
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 1988.4 2051 55.0
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 1980.3 2048 55.0
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1960.7 1510 68.9
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 1953.7 2048 54.5
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1946.8 2052 54.6
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1942.9 2052 54.5
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1937.2 2069 54.0
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1934.8 2068 55.4
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1932.5 2075 54.0
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1932.1 2038 54.1
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1924.1 2083 53.9
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1906.3 2044 53.8
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1892.1 2063 53.4
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1884.4 2047 53.3
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1873.6 2082 52.5
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1751.9 1705 56.6
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1736.1 2049 50.9
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1722.2 2118 49.6
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1689.1 1729 57.5
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1652.1 1469 62.2
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1622.1 1396 63.5
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1604.0 2049 48.6
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1513.4 2063 46.2
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1490.7 1191 68.5
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1370.9 1238 59.6
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1300.8 1990 43.1
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1278.5 1234 59.6
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1189.5 1646 44.7
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1141.7 1451 46.6
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 4.2e-293 1012.7 802 67.7
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 5.9e-287 992.3 803 66.0
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 4.8e-281 972.6 801 64.4
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 8.9e-259 898.7 870 56.6
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 8.3e-257 892.1 2209 33.5
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.0e-254 885.2 1232 44.7
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 5.2e-251 872.8 1072 48.1
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 7.6e-250 869.0 1001 49.6
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 5.6e-237 826.2 2214 31.9
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 4.0e-227 793.5 650 67.7
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 5.1e-222 776.5 1316 41.3
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 4.2e-200 703.7 532 69.4
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 1.9e-184 651.7 2046 31.2
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 1.6e-183 648.7 1999 30.4
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 6.8e-174 616.7 1044 39.9
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 5.4e-171 607.1 456 69.1
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 8.3e-164 583.2 1677 31.4
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 9.5e-144 516.5 592 48.8
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 8.3e-140 503.4 505 56.8
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 6.2e-119 434.1 345 64.9
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.6e-114 417.9 821 37.8
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 6.0e-114 417.5 319 69.6
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.1e-98 365.9 418 49.8
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 2.7e-98 365.5 377 58.9
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 6.7e-97 360.9 356 53.1
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.6e-95 356.3 567 42.0
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 5.5e-91 341.3 211 77.3
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 3.9e-89 335.1 210 75.2
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 9.1e-86 323.9 309 58.3
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 7.4e-80 304.3 189 79.4
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 4.5e-77 295.0 266 61.3
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 7.0e-70 271.2 334 47.9
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 4.2e-67 261.9 158 80.4
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 5.5e-67 261.5 159 78.0
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 1.4e-65 256.9 159 78.6
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 5.2e-65 255.0 247 57.5
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-64 252.3 1140 26.0
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 4.8e-63 248.4 474 37.6
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 7.7e-61 241.1 315 46.7
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 1.1e-54 220.7 213 60.1
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 3.5e-53 215.7 164 64.6
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.0e-49 202.6 127 71.7
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 1.3e-47 197.2 293 43.7
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 1.4e-46 193.7 324 41.7
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.6e-45 190.3 323 39.0
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 3.3e-43 182.6 607 29.8
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 1.6e-42 180.3 388 39.4
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 5.7e-40 171.8 110 82.7
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 4.1e-38 165.6 124 73.4
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 1.3e-36 160.6 126 66.7
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 6.2e-34 151.8 90 78.9
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 6.2e-34 151.8 496 33.7
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 5.4e-22 112.1 112 58.0
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 5.4e-22 112.1 112 58.0
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 1.2e-18 100.9 179 41.3
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.2e-18 100.9 122 54.9
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 1.1e-17 97.8 68 67.6
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.4e-17 97.4 116 49.1
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 8.4e-15 88.2 66 60.6
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.9e-14 87.0 67 64.2
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 7.8e-13 81.6 136 43.4
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 3.0e-12 79.7 138 37.0
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 3.0e-12 79.7 138 36.2
CAN.G1237.23 Capsicum annuum HOM05D000764 ORTHO05D010647 3.0e-12 79.7 103 48.5
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.5e-11 77.4 152 38.8
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 3.6e-10 72.8 110 40.0
SalBow5G5224 Salvia bowleyana HOM05D041314 ORTHO05D004953 1.3e-07 64.3 62 62.9
SalBow8G3767 Salvia bowleyana HOM05D041314 ORTHO05D004953 1.3e-07 64.3 62 62.9
SMO358G0275 Selaginella moellendorffii HOM05D015080 ORTHO05D019362 1.3e-07 64.3 79 41.8
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-07 63.9 113 33.6
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 3.8e-07 62.8 89 39.3
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 4.9e-07 62.4 48 64.6
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 5.4e-06 58.9 63 50.8
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 7.1e-06 58.5 81 43.2


User provided reference genes

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