Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 0.0e+00 1342.8 742 100.0
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 4.6e-255 884.8 459 100.0
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 1.1e-237 827.0 643 67.2
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 1.7e-233 813.1 625 66.9
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 1.1e-219 767.3 645 62.6
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 3.5e-218 762.3 631 63.7
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 1.7e-217 760.0 656 61.1
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 7.2e-216 754.6 656 60.7
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 9.4e-216 754.2 631 63.4
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 2.1e-215 753.1 610 64.8
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 2.7e-215 752.7 625 64.3
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 4.7e-215 751.9 619 62.8
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 2.2e-212 743.0 620 63.5
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 4.1e-211 738.8 653 60.2
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 7.0e-211 738.0 631 62.6
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 8.5e-209 731.1 643 58.3
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 1.2e-207 727.2 622 61.7
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 1.6e-207 726.9 626 60.5
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 8.0e-207 724.5 648 59.1
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 4.0e-206 722.2 637 60.0
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 4.0e-206 722.2 633 59.6
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 6.7e-206 721.5 641 58.8
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 8.8e-206 721.1 643 59.6
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 1.5e-205 720.3 622 60.0
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 5.7e-205 718.4 537 68.2
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 5.7e-205 718.4 621 61.4
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.7e-204 716.8 689 56.7
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 3.7e-204 715.7 651 58.5
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 3.1e-203 712.6 621 60.2
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 4.1e-203 712.2 624 60.9
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 4.1e-203 712.2 622 61.6
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 7.7e-202 708.0 582 63.1
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 1.3e-201 707.2 624 60.7
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 1.7e-201 706.8 622 61.1
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 2.2e-201 706.4 623 60.2
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 5.0e-201 705.3 621 59.7
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 6.5e-201 704.9 623 59.6
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 1.5e-200 703.7 609 60.9
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 1.5e-200 703.7 625 59.7
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.9e-200 703.4 622 59.0
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 3.2e-200 702.6 600 61.5
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 9.4e-200 701.0 595 61.7
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 9.4e-200 701.0 622 58.8
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 1.6e-199 700.3 640 58.3
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 6.1e-199 698.4 644 57.0
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 1.0e-198 697.6 669 55.3
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.8e-198 696.8 657 56.2
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 1.8e-198 696.8 686 56.3
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 3.0e-198 696.0 646 57.1
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 4.0e-198 695.7 511 67.9
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 4.0e-198 695.7 634 58.4
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 2.6e-197 693.0 622 59.0
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 4.4e-197 692.2 629 58.2
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 3.7e-196 689.1 585 60.7
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 4.8e-196 688.7 653 56.4
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 4.8e-196 688.7 669 55.0
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 6.3e-196 688.3 637 59.3
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 8.3e-196 688.0 626 59.1
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 1.8e-195 686.8 631 58.3
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 4.1e-195 685.6 623 59.1
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 1.2e-194 684.1 645 56.4
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 3.5e-194 682.6 625 57.8
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 4.5e-194 682.2 674 56.4
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.7e-193 680.2 626 60.1
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 1.9e-192 676.8 618 58.7
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 7.2e-192 674.9 636 57.5
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 7.2e-192 674.9 617 57.9
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 9.5e-192 674.5 617 58.0
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 2.1e-191 673.3 619 58.8
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 6.1e-191 671.8 617 57.7
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 1.0e-190 671.0 625 58.4
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 1.4e-190 670.6 621 58.6
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 2.3e-190 669.8 618 58.3
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 5.2e-190 668.7 626 58.1
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 1.7e-188 663.7 617 56.9
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 1.1e-187 661.0 624 56.7
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.1e-187 661.0 632 58.2
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 3.5e-186 656.0 652 54.4
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 2.3e-185 653.3 595 58.2
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 2.8e-183 646.4 626 56.2
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 1.2e-181 641.0 694 52.6
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 2.8e-175 619.8 636 53.6
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 2.6e-173 613.2 621 55.7
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 6.4e-172 608.6 618 53.7
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 1.1e-168 597.8 607 52.6
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 3.9e-153 546.2 431 65.0
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 2.0e-149 533.9 520 54.6
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.7e-146 523.5 382 69.9
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 1.9e-139 500.7 649 45.0
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 6.7e-137 492.3 617 45.7
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 1.1e-136 491.5 583 46.8
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 7.4e-136 488.8 411 61.8
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.6e-127 461.1 361 67.0
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.8e-121 441.0 552 50.5
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.8e-121 441.0 647 43.3
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 2.4e-110 404.1 469 45.6
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 6.9e-110 402.5 256 75.4
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 3.2e-99 367.1 559 39.9
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 1.8e-94 351.3 473 44.0
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 3.5e-85 320.5 349 54.2
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 6.5e-84 316.2 223 73.5
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.2e-80 305.4 187 80.2
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 4.4e-80 303.5 239 65.7
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 1.6e-77 295.0 387 44.7
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 5.0e-76 290.0 353 48.2
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 1.9e-75 288.1 357 48.5
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 5.2e-73 280.0 544 34.7
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 1.2e-72 278.9 168 79.8
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 1.2e-72 278.9 183 76.0
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 2.4e-70 271.2 223 64.6
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 1.3e-68 265.4 150 83.3
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 7.3e-67 259.6 410 38.8
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 2.2e-63 248.1 275 53.8
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.3e-60 238.8 588 33.8
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 5.0e-60 236.9 157 76.4
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.4e-57 228.8 378 37.8
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 6.8e-57 226.5 127 85.0
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 7.5e-56 223.0 333 40.8
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 3.9e-52 210.7 130 78.5
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 2.2e-47 194.9 457 32.6
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 9.9e-40 169.5 186 50.0
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 1.5e-32 145.6 210 41.4
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 5.8e-32 143.7 175 46.3
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 7.6e-32 143.3 165 46.7
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 4.3e-27 127.5 101 60.4
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 3.6e-26 124.4 151 51.7
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 4.0e-25 120.9 92 58.7
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 1.6e-18 99.0 80 55.0
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 6.2e-18 97.1 242 33.5
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 8.4e-15 86.7 81 55.6
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 9.3e-14 83.2 76 52.6
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 3.9e-12 77.8 55 69.1
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 3.1e-09 68.2 53 64.2
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 3.4e-08 64.7 73 45.2
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 5.0e-07 60.8 200 28.5
Actinidia14170 Actinidia chinensis HOM05D005523 ORTHO05D026295 1.9e-06 58.9 82 42.7
SEGI_20523 Sequoiadendron giganteum HOM05D005523 ORTHO05D000001 2.5e-06 58.5 123 28.5


User provided reference genes

Program Settings