Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 1.4e-49 199.1 89 100.0
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 2.0e-40 168.7 89 85.4
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 4.5e-40 167.5 87 86.2
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 5.9e-40 167.2 90 84.4
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 7.7e-40 166.8 89 83.1
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 2.2e-39 165.2 89 83.1
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 2.9e-39 164.9 87 88.5
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 3.8e-39 164.5 89 83.1
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.0e-39 164.1 85 87.1
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 8.5e-39 163.3 87 87.4
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.9e-38 162.2 85 85.9
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.9e-38 162.2 85 85.9
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 1.9e-38 162.2 85 85.9
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 1.9e-38 162.2 88 84.1
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 3.2e-38 161.4 85 83.5
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 3.2e-38 161.4 85 83.5
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 7.2e-38 160.2 89 83.1
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 7.2e-38 160.2 90 82.2
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 1.2e-37 159.5 88 83.0
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 1.6e-37 159.1 87 81.6
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 1.6e-37 159.1 87 81.6
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 2.1e-37 158.7 90 80.0
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 2.7e-37 158.3 90 80.0
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 2.7e-37 158.3 87 82.8
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 8.0e-37 156.8 88 77.3
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 8.0e-37 156.8 88 77.3
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 8.0e-37 156.8 87 79.3
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 1.0e-36 156.4 76 88.2
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.0e-36 156.4 89 82.0
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 1.0e-36 156.4 86 82.6
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 1.0e-36 156.4 85 82.4
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 1.0e-36 156.4 85 82.4
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.0e-36 156.4 89 78.7
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.0e-36 156.4 89 78.7
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.0e-36 156.4 89 78.7
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.0e-36 156.4 87 81.6
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.4e-36 156.0 89 77.5
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 1.4e-36 156.0 87 85.1
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 1.4e-36 156.0 90 81.1
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 1.8e-36 155.6 89 80.9
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 1.8e-36 155.6 87 83.9
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 3.9e-36 154.5 87 78.2
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 3.9e-36 154.5 88 80.7
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 3.9e-36 154.5 89 77.5
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 3.9e-36 154.5 85 82.4
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 5.2e-36 154.1 76 86.8
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 5.2e-36 154.1 87 81.6
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 5.2e-36 154.1 85 81.2
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 5.2e-36 154.1 79 86.1
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 5.2e-36 154.1 89 78.7
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 5.2e-36 154.1 89 78.7
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 5.2e-36 154.1 89 78.7
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 6.7e-36 153.7 89 77.5
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 6.7e-36 153.7 87 77.0
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 8.8e-36 153.3 89 77.5
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 1.5e-35 152.5 90 80.0
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 2.0e-35 152.1 89 77.5
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.6e-35 151.8 87 80.5
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.6e-35 151.8 87 80.5
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 2.6e-35 151.8 89 79.8
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 3.3e-35 151.4 89 76.4
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 3.3e-35 151.4 87 80.5
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 4.4e-35 151.0 81 82.7
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 4.4e-35 151.0 87 79.3
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 5.7e-35 150.6 85 78.8
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 5.7e-35 150.6 88 78.4
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 7.4e-35 150.2 87 77.0
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 7.4e-35 150.2 90 77.8
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 9.7e-35 149.8 90 77.8
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.3e-34 149.4 76 84.2
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 1.3e-34 149.4 77 85.7
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 1.7e-34 149.1 87 78.2
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 1.7e-34 149.1 87 78.2
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 1.7e-34 149.1 70 90.0
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.7e-34 149.1 86 79.1
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 1.7e-34 149.1 92 77.2
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 2.8e-34 148.3 85 80.0
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.8e-34 148.3 87 77.0
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 4.8e-34 147.5 87 78.2
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 6.3e-34 147.1 87 77.0
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 6.3e-34 147.1 85 77.6
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 6.3e-34 147.1 88 77.3
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 8.2e-34 146.7 87 77.0
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 8.2e-34 146.7 92 75.0
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.1e-33 146.4 76 82.9
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 1.1e-33 146.4 87 75.9
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 1.1e-33 146.4 89 73.0
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 1.1e-33 146.4 70 88.6
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.1e-33 146.4 88 75.0
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 1.1e-33 146.4 89 73.0
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 1.8e-33 145.6 89 77.5
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 1.8e-33 145.6 89 73.0
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 2.4e-33 145.2 88 75.0
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.4e-33 145.2 87 77.0
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 3.1e-33 144.8 89 76.4
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 9.1e-33 143.3 79 77.2
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.2e-32 142.9 79 77.2
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 1.2e-32 142.9 90 74.4
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 1.2e-32 142.9 88 73.9
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.6e-32 142.5 85 76.5
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 2.0e-32 142.1 88 76.1
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 3.5e-32 141.4 84 72.6
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 4.5e-32 141.0 86 76.7
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 3.8e-31 137.9 88 71.6
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 5.0e-31 137.5 78 78.2
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 6.5e-31 137.1 109 61.5
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 8.5e-31 136.7 89 71.9
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 5.5e-30 134.0 72 79.2
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 1.2e-27 126.3 63 84.1
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 2.2e-26 122.1 63 81.0
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 1.8e-25 119.0 159 42.1
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 2.4e-25 118.6 64 85.9
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 4.1e-25 117.9 64 84.4
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 4.1e-25 117.9 63 85.7
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 3.8e-23 111.3 53 90.6
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 3.8e-23 111.3 53 90.6
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 5.0e-23 110.9 65 76.9
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 5.5e-22 107.5 87 56.3
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 5.5e-22 107.5 65 75.4
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 7.2e-22 107.1 62 80.6
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 2.1e-21 105.5 53 88.7
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 4.7e-21 104.4 69 71.0
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 6.1e-21 104.0 61 77.0
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 6.1e-21 104.0 53 86.8
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 8.0e-21 103.6 84 59.5
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 8.0e-21 103.6 62 79.0
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.0e-20 103.2 61 77.0
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 1.0e-20 103.2 50 90.0
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 3.0e-20 101.7 65 75.4
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 4.0e-20 101.3 63 77.8
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 5.2e-20 100.9 64 75.0
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 5.2e-20 100.9 54 87.0
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 8.8e-20 100.1 69 71.0
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 3.4e-19 98.2 61 73.8
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 4.4e-19 97.8 64 73.4
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 4.4e-19 97.8 62 72.6
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 7.5e-19 97.1 61 63.9
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 1.7e-18 95.9 61 73.8
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 3.7e-18 94.7 64 73.4
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 4.8e-18 94.4 64 68.8
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.0e-15 86.7 64 67.2
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 4.2e-14 81.3 38 92.1
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 1.2e-13 79.7 65 52.3
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 1.2e-11 73.2 86 47.7
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 1.2e-11 73.2 63 54.0


User provided reference genes

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