Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021580.1 Olea europaea HOM05D005683 ORTHO05D006958 2.1e-149 532.3 274 100.0
SGA_v2.0_scaffold114G31992 Striga asiatica HOM05D005683 ORTHO05D006958 3.2e-97 359.0 256 68.8
MSTRG.7277 Avicennia marina HOM05D005683 ORTHO05D006958 5.7e-94 348.2 255 66.3
Cc02_g12200 Coffea canephora HOM05D005683 ORTHO05D006958 5.6e-89 331.6 251 64.5
Migut.H01529 Erythranthe guttata HOM05D005683 ORTHO05D006958 2.8e-88 329.3 244 65.6
COL.COLO4_31635 Corchorus olitorius HOM05D005683 ORTHO05D006958 5.2e-87 325.1 237 66.2
Potri.011G040100 Populus trichocarpa HOM05D005683 ORTHO05D006958 1.5e-86 323.6 232 66.8
Dinv40458 Davidia involucrata HOM05D005683 ORTHO05D006958 2.0e-86 323.2 267 61.4
GSVIVG01003677001 Vitis vinifera HOM05D005683 ORTHO05D006958 2.0e-86 323.2 231 66.7
Rhsim02G0118200 Rhododendron simsii HOM05D005683 ORTHO05D006958 1.7e-85 320.1 251 62.2
Rhsim02G0118400 Rhododendron simsii HOM05D005683 ORTHO05D006958 1.7e-85 320.1 251 62.2
QL05p080525 Quercus lobata HOM05D005683 ORTHO05D006958 2.2e-85 319.7 228 65.8
Haze_06612 Corylus avellana HOM05D005683 ORTHO05D006958 1.1e-84 317.4 231 64.5
arahy.Tifrunner.gnm1.ann1.1EQ2T2 Arachis hypogaea HOM05D005683 ORTHO05D006958 2.4e-84 316.2 229 63.3
Sc17g0006760 Simmondsia chinensis HOM05D005683 ORTHO05D006958 1.2e-83 313.9 222 65.8
Actinidia24049 Actinidia chinensis HOM05D005683 ORTHO05D006958 3.5e-83 312.4 232 65.5
Lj6g0011505 Lotus japonicus HOM05D005683 ORTHO05D006958 3.5e-83 312.4 213 67.6
PGR042G1297 Punica granatum HOM05D005683 ORTHO05D006958 7.8e-83 311.2 228 64.9
arahy.Tifrunner.gnm1.ann1.YX67LP Arachis hypogaea HOM05D005683 ORTHO05D006958 1.7e-82 310.1 229 62.0
Lj2A278T71 Lonicera japonica HOM05D005683 ORTHO05D006958 5.0e-82 308.5 251 61.0
Lalb_Chr05g0218101 Lupinus albus HOM05D005683 ORTHO05D006958 5.0e-82 308.5 241 61.4
TAR629G3446 Trochodendron aralioides HOM05D005683 ORTHO05D006958 5.0e-82 308.5 252 60.7
Migut.M01228 Erythranthe guttata HOM05D005683 ORTHO05D006958 6.6e-82 308.1 237 62.4
Atru.chr10.2035 Acer truncatum HOM05D005683 ORTHO05D006958 2.5e-81 306.2 231 62.8
Eucgr.E03677 Eucalyptus grandis HOM05D005683 ORTHO05D006958 3.3e-81 305.8 227 64.3
PGSC0003DMG400022348 Solanum tuberosum HOM05D005683 ORTHO05D006958 7.3e-81 304.7 222 66.2
TAR627G0612 Trochodendron aralioides HOM05D005683 ORTHO05D006958 1.2e-80 303.9 251 59.8
Sopen02g024190 Solanum pennellii HOM05D005683 ORTHO05D006958 1.6e-80 303.5 222 65.8
CiPaw.10G115800 Carya illinoinensis HOM05D005683 ORTHO05D006958 3.6e-80 302.4 234 61.5
Solyc02g079390.4 Solanum lycopersicum HOM05D005683 ORTHO05D006958 4.7e-80 302.0 222 64.9
Medtr2g011490 Medicago truncatula HOM05D005683 ORTHO05D006958 6.2e-80 301.6 213 63.4
ClCG01G022390 Citrullus lanatus HOM05D005683 ORTHO05D006958 1.4e-79 300.4 252 57.9
TPR.G36735 Trifolium pratense HOM05D005683 ORTHO05D006958 1.8e-79 300.1 213 62.9
Manes.17G032900 Manihot esculenta HOM05D005683 ORTHO05D006958 2.3e-79 299.7 221 63.3
Lsat_1_v5_gn_7_20320 Lactuca sativa HOM05D005683 ORTHO05D006958 5.2e-79 298.5 246 61.0
TAR626G0062 Trochodendron aralioides HOM05D005683 ORTHO05D006958 5.2e-79 298.5 250 59.6
Nitab4.5_0000649g0210 Nicotiana tabacum HOM05D005683 ORTHO05D006958 8.9e-79 297.7 242 60.3
Potri.004G026700 Populus trichocarpa HOM05D005683 ORTHO05D006958 8.9e-79 297.7 251 57.4
MD05G1328900 Malus domestica HOM05D005683 ORTHO05D006958 1.5e-78 297.0 219 63.0
MELO3C007336.2 Cucumis melo HOM05D005683 ORTHO05D006958 2.6e-78 296.2 228 62.3
TWI38G0326 Tripterygium wilfordii HOM05D005683 ORTHO05D006958 2.6e-78 296.2 224 62.9
Ca_00226_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 4.4e-78 295.4 216 62.5
Gohir.A05G166700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 4.4e-78 295.4 246 59.3
Gohir.D05G169700 Gossypium hirsutum HOM05D005683 ORTHO05D006958 4.4e-78 295.4 246 59.3
Medtr4g091550 Medicago truncatula HOM05D005683 ORTHO05D006958 4.4e-78 295.4 234 62.0
Glyma.13G247700 Glycine max HOM05D005683 ORTHO05D006958 5.8e-78 295.0 230 59.6
TPR.G15376 Trifolium pratense HOM05D005683 ORTHO05D006958 7.5e-78 294.7 219 64.4
Peaxi162Scf01035g00114 Petunia axillaris HOM05D005683 ORTHO05D006958 9.8e-78 294.3 227 61.2
Gorai.009G174900 Gossypium raimondii HOM05D005683 ORTHO05D006958 1.3e-77 293.9 246 59.3
MBI02_g38754_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 2.2e-77 293.1 254 59.8
Lalb_Chr18g0060021 Lupinus albus HOM05D005683 ORTHO05D006958 2.9e-77 292.7 226 61.1
CsaV3_6G049570 Cucumis sativus L. HOM05D005683 ORTHO05D006958 3.7e-77 292.4 228 61.4
MD10G1305800 Malus domestica HOM05D005683 ORTHO05D006958 3.7e-77 292.4 219 63.5
FvH4_3g03670 Fragaria vesca HOM05D005683 ORTHO05D006958 4.9e-77 292.0 250 56.8
FAN11G3671 Fragaria x ananassa HOM05D005683 ORTHO05D006958 4.9e-77 292.0 250 56.8
FAN16G0586 Fragaria x ananassa HOM05D005683 ORTHO05D006958 4.9e-77 292.0 250 56.8
CiPaw.09G156400 Carya illinoinensis HOM05D005683 ORTHO05D006958 6.4e-77 291.6 232 59.9
AUR62012512 Chenopodium quinoa HOM05D005683 ORTHO05D006958 6.4e-77 291.6 222 64.0
Sed0004151 Sechium edule HOM05D005683 ORTHO05D006958 6.4e-77 291.6 216 63.9
VMungo0540G1177 Vigna mungo HOM05D005683 ORTHO05D006958 8.3e-77 291.2 230 59.1
FAN21G2210 Fragaria x ananassa HOM05D005683 ORTHO05D006958 1.1e-76 290.8 227 60.4
Gorai.011G021200 Gossypium raimondii HOM05D005683 ORTHO05D006958 1.4e-76 290.4 227 62.1
Gohir.A10G019100 Gossypium hirsutum HOM05D005683 ORTHO05D006958 1.9e-76 290.0 227 60.8
Phvul.006G193600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 1.9e-76 290.0 217 62.2
Prupe.4G033900 Prunus persica HOM05D005683 ORTHO05D006958 1.9e-76 290.0 242 58.3
Ah.09g236340 Amaranthus hybridus HOM05D005683 ORTHO05D006958 3.2e-76 289.3 220 63.2
Thecc.06G202400 Theobroma cacao HOM05D005683 ORTHO05D006958 4.1e-76 288.9 229 60.7
Ciclev10016376m.g Citrus clementina HOM05D005683 ORTHO05D006958 7.0e-76 288.1 229 60.7
Gohir.D10G020000 Gossypium hirsutum HOM05D005683 ORTHO05D006958 9.2e-76 287.7 227 61.2
Manes.16G019184 Manihot esculenta HOM05D005683 ORTHO05D006958 1.6e-75 287.0 222 63.1
Sed0027497 Sechium edule HOM05D005683 ORTHO05D006958 2.0e-75 286.6 234 59.4
VMungo0251G1023 Vigna mungo HOM05D005683 ORTHO05D006958 2.0e-75 286.6 235 56.6
FAN25G1197 Fragaria x ananassa HOM05D005683 ORTHO05D006958 4.6e-75 285.4 227 59.5
HanXRQChr15g0482541 Helianthus annuus HOM05D005683 ORTHO05D006958 7.8e-75 284.6 219 62.6
RcHm_v2.0_Chr5g0005711 Rosa chinensis HOM05D005683 ORTHO05D006958 7.8e-75 284.6 234 58.1
vmacro15855 Vaccinium macrocarpon HOM05D005683 ORTHO05D006958 1.0e-74 284.3 322 48.4
Glyma.15G066100 Glycine max HOM05D005683 ORTHO05D006958 3.9e-74 282.3 230 57.0
Nitab4.5_0005620g0030 Nicotiana tabacum HOM05D005683 ORTHO05D006958 3.9e-74 282.3 244 57.4
Carub.0001s1101 Capsella rubella HOM05D005683 ORTHO05D006958 2.5e-73 279.6 221 60.2
Hund23579 Selenicereus undatus HOM05D005683 ORTHO05D006958 3.3e-73 279.3 221 62.0
Hund21293 Selenicereus undatus HOM05D005683 ORTHO05D006958 7.3e-73 278.1 228 57.5
Nn1g03823 Nelumbo nucifera HOM05D005683 ORTHO05D006958 9.5e-73 277.7 251 55.8
Phvul.002G220600 Phaseolus vulgaris HOM05D005683 ORTHO05D006958 2.1e-72 276.6 218 59.2
Actinidia11820 Actinidia chinensis HOM05D003506 ORTHO05D006958 4.7e-72 275.4 183 69.9
Ca_18471_v3 Cicer arietinum L. HOM05D005683 ORTHO05D006958 8.1e-72 274.6 222 60.8
PSO541G3127 Papaver somniferum HOM05D005683 ORTHO05D006958 1.1e-71 274.2 255 54.9
CANSAT56G4448 Cannabis sativa HOM05D005683 ORTHO05D006958 1.4e-71 273.9 223 60.1
ECA236G4035 Erigeron canadensis HOM05D005683 ORTHO05D006958 1.4e-71 273.9 225 60.0
AL1G22470 Arabidopsis lyrata HOM05D005683 ORTHO05D006958 2.3e-71 273.1 219 58.9
Lalb_Chr09g0327231 Lupinus albus HOM05D005683 ORTHO05D006958 3.1e-71 272.7 209 61.2
THA.LOC104818970 Tarenaya hassleriana HOM05D005683 ORTHO05D006958 4.0e-71 272.3 230 58.7
Lj1A1216T22 Lonicera japonica HOM05D005683 ORTHO05D006958 1.2e-70 270.8 223 59.6
PSO675G7592 Papaver somniferum HOM05D005683 ORTHO05D006958 1.2e-70 270.8 255 54.5
CAN.G424.37 Capsicum annuum HOM05D005683 ORTHO05D006958 2.0e-70 270.0 209 62.7
BolC5t29702H Brassica oleracea HOM05D005683 ORTHO05D006958 2.6e-70 269.6 221 56.1
C05p09600 Brassica napus HOM05D005683 ORTHO05D006958 5.8e-70 268.5 221 56.1
unitig_748.g7566 Utricularia gibba HOM05D005683 ORTHO05D006958 5.8e-70 268.5 231 58.4
A06p08000 Brassica napus HOM05D005683 ORTHO05D006958 7.5e-70 268.1 221 56.1
BraA06t23999Z Brassica rapa HOM05D005683 ORTHO05D006958 7.5e-70 268.1 221 56.1
CARHR011620 Cardamine hirsuta HOM05D005683 ORTHO05D006958 1.3e-69 267.3 223 58.3
Aa31LG1G3330 Aethionema arabicum HOM05D005683 ORTHO05D006958 1.7e-69 266.9 221 57.5
AT1G11380 Arabidopsis thaliana HOM05D005683 ORTHO05D006958 1.7e-69 266.9 219 58.0
BcaC05g25012 Brassica carinata HOM05D005683 ORTHO05D006958 2.9e-69 266.2 221 56.1
MBI02_g46153_MAGBIO Magnolia biondii HOM05D005683 ORTHO05D006958 1.1e-68 264.2 254 56.7
DCAR_004160 Daucus carota HOM05D005683 ORTHO05D006958 7.1e-68 261.5 219 56.2
Lj4g0024466 Lotus japonicus HOM05D005683 ORTHO05D006958 1.6e-67 260.4 231 56.7
Cpa.g.sc27.157 Carica papaya HOM05D005683 ORTHO05D006958 3.5e-67 259.2 255 56.5
Glyma.07G188900 Glycine max HOM05D005683 ORTHO05D006958 4.6e-67 258.8 233 54.5
arahy.Tifrunner.gnm1.ann1.NC80VA Arachis hypogaea HOM05D005683 ORTHO05D006958 8.1e-64 248.1 220 55.9
arahy.Tifrunner.gnm1.ann1.B3SD72 Arachis hypogaea HOM05D005683 ORTHO05D006958 5.8e-62 241.9 220 55.0
Zm00001eb323790 Zea mays HOM05D005683 ORTHO05D006958 5.8e-62 241.9 242 49.6
HPP92_000912 Vanilla planifolia HOM05D005683 ORTHO05D006958 1.4e-60 237.3 256 50.0
Duzib192G0920 Durio zibethinus HOM05D005683 ORTHO05D006958 1.6e-56 223.8 229 51.1
CDE02G0678 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 1.7e-53 213.8 245 45.7
Duzib235G0662 Durio zibethinus HOM05D005683 ORTHO05D006958 2.9e-53 213.0 226 51.3
EL10Ac8g19981 Beta vulgaris HOM05D005683 ORTHO05D006958 1.9e-52 210.3 213 50.7
ATR1132G083 Amborella trichopoda HOM05D005683 ORTHO05D006958 3.0e-50 203.0 145 60.0
CSS0013005 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 2.8e-48 196.4 174 57.5
Psat1g209480 Pisum sativum HOM05D005683 ORTHO05D006958 9.0e-47 191.4 129 64.3
AUR62014686 Chenopodium quinoa HOM05D005683 ORTHO05D006958 2.0e-46 190.3 217 46.5
Glyma.08G060400 Glycine max HOM05D005683 ORTHO05D006958 1.3e-40 171.0 154 55.2
TAR629G2478 Trochodendron aralioides HOM05D005683 ORTHO05D006958 3.4e-38 162.9 151 55.0
Pp3c18_19760 Physcomitrium patens HOM05D005683 ORTHO05D006958 1.0e-34 151.4 156 44.2
Pp3c21_1800 Physcomitrium patens HOM05D005683 ORTHO05D006958 1.8e-34 150.6 171 42.1
CSS0013141 Camellia sinensis var. sinensis HOM05D005683 ORTHO05D006958 6.2e-32 142.1 102 66.7
CDE05G0673 Ceratophyllum demersum HOM05D005683 ORTHO05D006958 1.6e-27 127.5 150 44.0
SGA_v2.0_scaffold42G16089 Striga asiatica HOM05D005683 ORTHO05D006958 2.3e-26 123.6 150 45.3
Sp1g10010 Schrenkiella parvula HOM05D005683 ORTHO05D006958 1.3e-24 117.9 221 36.7
Prupe.5G244100 Prunus persica HOM05D005683 ORTHO05D006958 3.1e-23 113.2 79 62.0
Psat1g209520 Pisum sativum HOM05D005683 ORTHO05D006958 9.7e-17 91.7 73 61.6
CBR_g51429 Chara braunii HOM05D005683 ORTHO05D006958 1.3e-13 81.3 170 33.5
Mapoly0084s0076 Marchantia polymorpha HOM05D002715 ORTHO05D002996 2.3e-10 70.5 225 29.3
CBR_g50374 Chara braunii HOM05D005683 ORTHO05D006958 2.0e-09 67.4 171 29.8
HanXRQChr07g0203561 Helianthus annuus HOM05D002715 ORTHO05D002996 4.4e-09 66.2 220 29.1
arahy.Tifrunner.gnm1.ann1.8N8WMT Arachis hypogaea HOM05D002715 ORTHO05D002996 6.3e-08 62.4 142 30.3
Lsat_1_v5_gn_2_125901 Lactuca sativa HOM05D002715 ORTHO05D002996 1.1e-07 61.6 154 32.5
arahy.Tifrunner.gnm1.ann1.UC8GIG Arachis hypogaea HOM05D002715 ORTHO05D002996 3.1e-07 60.1 142 28.9
Sabra16G0129000 Salix brachista HOM05D002715 ORTHO05D002996 4.1e-07 59.7 140 32.1
Carub.0001s4117 Capsella rubella HOM05D000414 ORTHO05D000276 5.3e-07 59.3 134 28.4
HanXRQChr09g0252171 Helianthus annuus HOM05D002715 ORTHO05D002996 5.3e-07 59.3 169 29.0
ECA238G4170 Erigeron canadensis HOM05D002715 ORTHO05D002996 6.9e-07 58.9 228 27.2
HPP92_012010 Vanilla planifolia HOM05D002715 ORTHO05D002996 6.9e-07 58.9 144 29.2
THA.LOC104823178 Tarenaya hassleriana HOM05D002715 ORTHO05D002996 1.2e-06 58.2 153 29.4
Zm00001eb404910 Zea mays HOM05D002715 ORTHO05D002996 1.2e-06 58.2 152 33.6
Aa31LG10G2700 Aethionema arabicum HOM05D000414 ORTHO05D000276 1.5e-06 57.8 134 26.9
TWI18G1145 Tripterygium wilfordii HOM05D000414 ORTHO05D000276 1.5e-06 57.8 134 28.4
TWI53G1949 Tripterygium wilfordii HOM05D002715 ORTHO05D002996 1.5e-06 57.8 140 31.4
VMungo0331G1720 Vigna mungo HOM05D002715 ORTHO05D002996 1.5e-06 57.8 141 30.5
Os01g0825900 Oryza sativa ssp. japonica HOM05D002715 ORTHO05D002996 2.0e-06 57.4 146 32.2
CARHR042340 Cardamine hirsuta HOM05D000414 ORTHO05D000276 2.6e-06 57.0 134 27.6
SMO230G0095 Selaginella moellendorffii HOM05D002715 ORTHO05D002996 3.4e-06 56.6 143 28.7
HanXRQChr14g0458821 Helianthus annuus HOM05D002715 ORTHO05D002996 4.5e-06 56.2 133 34.6
Ah.08g209890 Amaranthus hybridus HOM05D002715 ORTHO05D002996 5.9e-06 55.8 217 25.8
AT1G52200 Arabidopsis thaliana HOM05D000414 ORTHO05D000276 5.9e-06 55.8 143 28.0
Nn2g13296 Nelumbo nucifera HOM05D002715 ORTHO05D002996 7.7e-06 55.5 208 28.4
Nn2g14826 Nelumbo nucifera HOM05D002715 ORTHO05D002996 7.7e-06 55.5 181 28.7
Potri.016G129700 Populus trichocarpa HOM05D002715 ORTHO05D002996 7.7e-06 55.5 139 31.7
SEGI_36695 Sequoiadendron giganteum HOM05D000414 ORTHO05D000276 7.7e-06 55.5 130 26.2


User provided reference genes

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