Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 6.4e-87 323.9 152 100.0
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 4.8e-42 174.9 153 57.5
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 1.7e-34 149.8 157 52.9
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 3.7e-34 148.7 141 52.5
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 1.6e-29 133.3 159 43.4
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 6.1e-29 131.3 163 42.3
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 6.1e-29 131.3 168 41.1
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 1.5e-27 126.7 170 44.1
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 5.7e-27 124.8 155 46.5
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.8e-26 121.7 159 46.5
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.8e-26 121.7 159 46.5
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 6.3e-26 121.3 157 46.5
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 4.1e-25 118.6 151 47.0
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 4.1e-25 118.6 163 44.8
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 4.5e-24 115.2 167 43.1
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.7e-24 114.4 148 45.9
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.0e-23 114.0 168 42.3
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.3e-23 113.6 159 44.7
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 1.7e-23 113.2 172 42.4
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 6.5e-23 111.3 172 41.3
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 8.5e-23 110.9 163 39.9
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 1.5e-22 110.2 161 40.4
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 9.5e-22 107.5 158 44.3
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 1.2e-21 107.1 159 40.9
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 2.1e-21 106.3 153 43.1
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 2.8e-21 105.9 153 43.8
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 3.6e-21 105.5 159 42.8
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.7e-21 105.1 147 46.3
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 6.1e-21 104.8 160 40.0
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 1.4e-20 103.6 130 46.9
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 3.0e-20 102.4 168 38.7
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.8e-20 101.3 148 42.6
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 1.2e-19 100.5 164 40.9
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.5e-19 100.1 153 42.5
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.5e-19 100.1 152 42.1
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.6e-19 99.4 163 41.7
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.7e-18 96.7 148 42.6
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 4.9e-18 95.1 147 46.3
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 4.1e-17 92.0 118 44.9
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.1e-17 92.0 164 39.6
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 5.4e-17 91.7 170 39.4
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 7.0e-17 91.3 153 37.9
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 1.6e-16 90.1 148 41.9
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 2.0e-16 89.7 165 39.4
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 4.5e-16 88.6 145 40.7
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 7.8e-16 87.8 179 36.9
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.0e-15 87.4 143 40.6
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 1.7e-15 86.7 149 38.3
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.8e-15 85.5 187 35.3
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 6.6e-15 84.7 183 35.0
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 8.6e-15 84.3 92 50.0
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 8.6e-15 84.3 183 36.6
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 1.1e-14 84.0 147 42.2
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.9e-14 83.2 183 36.1
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.9e-14 83.2 151 39.7
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 1.9e-14 83.2 146 39.0
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 3.3e-14 82.4 154 41.6
Lsat_1_v5_gn_4_159841 Lactuca sativa HOM05D005317 ORTHO05D005146 4.3e-14 82.0 150 38.7
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 5.6e-14 81.6 144 38.9
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.2e-13 80.5 184 34.8
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 1.2e-13 80.5 156 36.5
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 2.1e-13 79.7 149 37.6
PGSC0003DMG400021404 Solanum tuberosum HOM05D061607 ORTHO05D005146 3.6e-13 79.0 144 39.6
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 6.1e-13 78.2 113 44.2
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 8.0e-13 77.8 150 38.0
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 1.0e-12 77.4 93 44.1
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 1.0e-12 77.4 160 38.8
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 1.0e-12 77.4 144 39.6
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 3.0e-12 75.9 147 38.1
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 4.0e-12 75.5 141 33.3
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.0e-12 75.5 145 35.9
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 4.0e-12 75.5 149 37.6
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.9e-12 74.3 146 37.0
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.2e-11 73.9 153 35.9
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.0e-11 73.2 144 36.1
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 2.0e-11 73.2 158 36.7
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.6e-11 72.8 145 35.9
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.4e-11 72.0 145 36.6
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 7.5e-11 71.2 149 36.2
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 7.5e-11 71.2 102 40.2
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 7.5e-11 71.2 163 32.5
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 9.8e-11 70.9 137 35.8
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.8e-11 70.9 143 32.9
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 2.2e-10 69.7 87 44.8
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 3.7e-10 68.9 164 32.3
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.7e-10 68.9 149 35.6
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 3.7e-10 68.9 145 33.8
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 4.9e-10 68.6 143 35.7
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 6.4e-10 68.2 140 36.4
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 8.3e-10 67.8 155 29.0
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 8.3e-10 67.8 146 36.3
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.4e-09 67.0 150 34.0
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 1.8e-09 66.6 170 31.2
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.8e-09 66.6 134 35.8
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.4e-09 66.2 146 35.6
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 3.2e-09 65.9 90 41.1
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 3.2e-09 65.9 146 35.6
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 7.0e-09 64.7 150 36.0
AUR62041096 Chenopodium quinoa HOM05D051035 ORTHO05D005146 1.6e-08 63.5 90 41.1
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 2.0e-08 63.2 144 36.1
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 2.0e-08 63.2 150 33.3
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.7e-08 62.8 172 30.2
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 2.7e-08 62.8 149 32.9
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 3.5e-08 62.4 142 34.5
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 4.6e-08 62.0 125 34.4
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 5.9e-08 61.6 127 36.2
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 5.9e-08 61.6 150 36.7
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 5.9e-08 61.6 150 32.7
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.8e-08 61.2 127 37.0
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 7.8e-08 61.2 143 36.4
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 1.0e-07 60.8 88 39.8
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 1.3e-07 60.5 155 29.0
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.7e-07 60.1 158 31.6
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 1.7e-07 60.1 135 28.9
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.3e-07 59.7 133 35.3
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 2.3e-07 59.7 135 31.9
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 3.0e-07 59.3 147 30.6
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 3.9e-07 58.9 109 37.6
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 3.9e-07 58.9 150 30.0
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 3.9e-07 58.9 146 36.3
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 8.6e-07 57.8 173 28.9
FAN24G2816 Fragaria x ananassa HOM05D030376 ORTHO05D005146 8.6e-07 57.8 125 33.6
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.1e-06 57.4 90 45.6
Gohir.D01G111366 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-06 57.0 83 42.2
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 1.5e-06 57.0 137 32.1
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 1.9e-06 56.6 170 32.9
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.5e-06 56.2 144 34.7
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 2.5e-06 56.2 144 31.2
Potri.014G012900 Populus trichocarpa HOM05D005317 ORTHO05D005146 3.3e-06 55.8 146 33.6
CsaV3_6G044310 Cucumis sativus L. HOM05D005317 ORTHO05D005146 5.6e-06 55.1 145 31.0
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 9.5e-06 54.3 126 31.0
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 9.5e-06 54.3 151 30.5
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 9.5e-06 54.3 146 31.5
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 9.5e-06 54.3 114 31.6


User provided reference genes

Program Settings