Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 1.8e-71 272.7 162 100.0
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 8.7e-50 200.7 162 78.4
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 2.3e-42 176.0 161 73.9
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 7.4e-41 171.0 148 75.7
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 8.2e-40 167.5 146 76.0
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 1.1e-39 167.2 150 74.0
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.8e-39 166.4 147 75.5
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.8e-39 166.4 161 70.2
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 4.5e-38 161.8 162 67.9
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 8.5e-37 157.5 162 67.3
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.4e-36 156.8 158 69.6
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 2.5e-36 156.0 162 66.7
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 2.7e-35 152.5 162 63.0
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 4.7e-35 151.8 162 65.4
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 7.9e-35 151.0 148 70.9
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 7.9e-35 151.0 162 65.4
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 3.0e-34 149.1 161 65.8
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.0e-33 146.4 164 65.2
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 4.4e-33 145.2 162 63.6
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 5.7e-33 144.8 144 70.1
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 2.2e-32 142.9 185 60.5
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 6.3e-32 141.4 160 63.8
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.3e-31 138.3 160 62.5
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 7.7e-30 134.4 153 66.7
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 5.0e-29 131.7 162 61.1
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 8.5e-29 131.0 157 63.1
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 4.2e-28 128.6 140 63.6
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 9.4e-28 127.5 166 57.8
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 9.4e-28 127.5 184 54.9
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 9.4e-28 127.5 156 63.5
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 4.7e-27 125.2 120 72.5
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.0e-26 124.0 179 54.2
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.4e-26 123.6 134 66.4
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 5.2e-26 121.7 161 59.0
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.5e-25 120.2 162 56.2
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 5.7e-25 118.2 135 63.7
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 7.5e-25 117.9 150 57.3
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 1.7e-24 116.7 97 84.5
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 3.7e-24 115.5 100 78.0
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 4.8e-24 115.2 128 67.2
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 4.8e-24 115.2 156 59.6
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 4.8e-24 115.2 155 62.6
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 6.3e-24 114.8 100 80.0
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 6.3e-24 114.8 171 50.3
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 8.2e-24 114.4 137 64.2
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 8.2e-24 114.4 137 64.2
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 8.2e-24 114.4 137 64.2
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 4.1e-23 112.1 154 53.9
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 9.1e-23 110.9 100 78.0
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 9.1e-23 110.9 162 54.3
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.0e-22 109.8 101 76.2
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 2.0e-22 109.8 96 80.2
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 2.7e-22 109.4 99 75.8
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 3.5e-22 109.0 135 61.5
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 4.5e-22 108.6 160 53.1
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.0e-21 107.5 113 71.7
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 1.3e-21 107.1 104 74.0
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 2.2e-21 106.3 96 79.2
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 2.9e-21 105.9 166 56.6
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 8.5e-21 104.4 96 78.1
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 1.1e-20 104.0 165 50.3
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.9e-20 103.2 107 71.0
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.2e-20 102.4 175 52.0
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 4.2e-20 102.1 127 55.1
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 5.5e-20 101.7 102 74.5
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 7.2e-20 101.3 105 77.1
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.2e-19 100.5 87 78.2
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.2e-19 100.5 173 48.6
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 1.2e-19 100.5 100 75.0
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.6e-19 100.1 100 70.0
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 2.7e-19 99.4 99 73.7
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 6.1e-19 98.2 136 52.2
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 6.1e-19 98.2 106 64.2
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 8.0e-19 97.8 140 55.7
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.4e-18 97.1 104 70.2
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.8e-18 96.7 172 49.4
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.8e-18 96.7 127 55.1
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 3.0e-18 95.9 107 62.6
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 6.8e-18 94.7 102 70.6
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 6.8e-18 94.7 102 70.6
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 6.8e-18 94.7 102 70.6
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 8.8e-18 94.4 115 66.1
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 8.8e-18 94.4 115 66.1
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 8.8e-18 94.4 106 63.2
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.5e-17 93.6 98 72.4
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 2.0e-17 93.2 104 71.2
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.0e-17 93.2 127 53.5
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.6e-17 92.8 127 53.5
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 3.4e-17 92.4 143 51.0
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 3.4e-17 92.4 60 76.7
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.4e-17 92.0 127 53.5
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 9.8e-17 90.9 127 52.8
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 1.3e-16 90.5 140 57.9
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 1.7e-16 90.1 106 59.4
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 2.2e-16 89.7 126 59.5
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 2.2e-16 89.7 100 71.0
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.2e-16 89.7 104 69.2
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 3.7e-16 89.0 100 71.0
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 3.7e-16 89.0 98 72.4
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 4.8e-16 88.6 98 63.3
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 4.8e-16 88.6 142 49.3
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 4.8e-16 88.6 98 70.4
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 1.1e-15 87.4 100 70.0
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 5.4e-15 85.1 157 53.5
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 2.0e-14 83.2 86 65.1
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 2.0e-14 83.2 86 65.1
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 2.0e-14 83.2 165 49.7
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 2.0e-14 83.2 90 62.2
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 2.7e-14 82.8 86 65.1
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 2.7e-14 82.8 86 65.1
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 5.9e-14 81.6 86 62.8
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 5.9e-14 81.6 86 62.8
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 5.9e-14 81.6 86 62.8
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 5.9e-14 81.6 111 55.0
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 5.9e-14 81.6 103 65.0
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 7.7e-14 81.3 172 48.3
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 1.3e-13 80.5 85 63.5
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.7e-13 80.1 137 49.6
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.7e-13 80.1 134 52.2
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 2.2e-13 79.7 88 68.2
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.9e-13 79.3 184 43.5
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 3.8e-13 79.0 92 65.2
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 6.5e-13 78.2 86 69.8
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 6.5e-13 78.2 85 62.4
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.5e-12 77.0 85 62.4
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 4.2e-12 75.5 116 53.4
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 5.5e-12 75.1 87 69.0
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 7.2e-12 74.7 90 66.7
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.6e-11 73.6 85 63.5
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 3.6e-11 72.4 134 50.0
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 4.7e-11 72.0 177 42.4
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 1.8e-10 70.1 98 57.1
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.0e-10 68.9 80 62.5
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 6.8e-10 68.2 68 72.1
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.2e-09 67.4 114 54.4
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.2e-09 67.4 68 66.2
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 1.5e-09 67.0 163 39.3
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.5e-09 67.0 106 54.7
Nitab4.5_0010352g0020 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.0e-09 66.6 178 43.3
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.6e-09 66.2 68 66.2
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 4.4e-09 65.5 119 52.1
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 9.8e-09 64.3 95 46.3
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.8e-08 62.8 85 48.2
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 6.3e-08 61.6 154 40.3
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 6.3e-08 61.6 68 58.8
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.8e-07 60.1 117 46.2
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 1.8e-07 60.1 114 49.1
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 3.1e-07 59.3 143 45.5
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 3.1e-07 59.3 117 46.2
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.1e-07 59.3 68 63.2
TPR.G38738 Trifolium pratense HOM05D011393 ORTHO05D013493 1.6e-06 57.0 116 44.0
AagrBONN_evm.TU.Sc2ySwM_228.3972 Anthoceros agrestis HOM05D004577 ORTHO05D005062 7.7e-06 54.7 108 48.1
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 7.7e-06 54.7 99 52.5


User provided reference genes

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