Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 6.6e-309 1063.1 515 100.0
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 8.1e-142 508.1 519 53.9
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 2.0e-140 503.4 514 54.5
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 3.4e-140 502.7 514 54.3
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 5.5e-138 495.4 519 52.4
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 7.1e-138 495.0 520 52.1
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.6e-137 493.8 520 51.9
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 4.6e-137 492.3 514 53.1
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 6.0e-137 491.9 513 52.8
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 3.0e-136 489.6 520 51.7
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 2.5e-135 486.5 515 52.4
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 8.2e-134 481.5 510 52.4
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.1e-133 479.6 521 51.6
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.1e-133 479.6 521 51.6
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 2.6e-132 476.5 522 51.0
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 1.1e-130 471.1 530 50.9
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.5e-130 468.8 520 49.0
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.8e-128 463.8 514 50.6
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.1e-128 462.2 544 49.4
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 5.7e-127 458.8 520 50.4
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 9.7e-127 458.0 530 49.4
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 4.1e-125 452.6 518 50.2
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.2e-124 451.1 520 49.8
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 1.5e-124 450.7 528 48.7
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 2.0e-124 450.3 527 48.4
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.7e-123 447.2 521 49.7
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.7e-123 447.2 521 48.9
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.7e-123 447.2 546 48.0
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 3.8e-123 446.0 515 49.3
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 5.0e-123 445.7 536 48.9
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 8.5e-123 444.9 521 49.3
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.4e-122 444.1 516 49.0
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 1.4e-122 444.1 522 49.8
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 3.2e-122 443.0 520 48.8
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 4.2e-122 442.6 516 49.6
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 1.2e-121 441.0 514 48.4
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.6e-121 440.7 514 48.8
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 4.6e-121 439.1 510 48.4
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 7.9e-121 438.3 525 48.6
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 7.9e-121 438.3 542 47.0
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.0e-120 438.0 516 49.2
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.3e-120 436.8 518 48.5
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 2.3e-120 436.8 530 47.4
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 5.1e-120 435.6 520 48.7
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 6.7e-120 435.3 527 47.6
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 1.5e-119 434.1 516 48.8
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 7.4e-119 431.8 523 47.8
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.7e-118 430.6 523 48.4
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.7e-118 430.6 535 47.7
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.7e-118 430.6 511 48.1
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.2e-118 430.3 523 48.4
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 3.7e-118 429.5 528 47.3
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 4.8e-118 429.1 536 46.8
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 8.2e-118 428.3 536 46.6
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.1e-117 427.9 531 46.7
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.1e-117 426.4 528 46.2
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.1e-117 426.0 528 46.2
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 4.1e-117 426.0 510 47.6
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 5.3e-117 425.6 514 46.9
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 5.9e-116 422.2 532 47.2
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 5.9e-116 422.2 511 49.5
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.7e-116 421.8 528 46.6
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.0e-115 421.4 545 45.3
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 1.3e-115 421.0 533 45.2
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.7e-115 420.6 516 49.2
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 6.5e-115 418.7 532 45.7
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 8.5e-115 418.3 497 48.1
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.4e-114 417.5 527 45.7
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 4.2e-114 416.0 521 47.0
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 7.2e-114 415.2 526 45.6
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 9.4e-114 414.8 533 45.2
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.4e-114 414.8 516 45.7
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.2e-113 414.5 533 45.0
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.6e-113 414.1 529 46.1
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.6e-113 412.9 527 45.5
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.0e-112 411.4 517 47.4
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.0e-112 411.4 526 45.2
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.4e-112 411.0 514 46.7
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.4e-112 411.0 489 50.3
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 3.0e-112 409.8 529 45.9
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 3.9e-112 409.5 514 46.9
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.1e-111 407.9 514 45.5
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.5e-111 407.5 517 45.3
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 2.2e-110 403.7 516 46.7
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.8e-110 403.3 501 46.1
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 4.8e-110 402.5 517 45.1
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 1.1e-109 401.4 524 46.0
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.1e-109 401.4 517 45.6
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 2.4e-109 400.2 534 43.3
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 3.1e-109 399.8 527 42.7
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.2e-108 397.9 525 45.5
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 4.5e-108 396.0 525 45.7
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 1.7e-107 394.0 532 44.9
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 5.0e-107 392.5 525 45.5
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 6.5e-107 392.1 532 45.3
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 4.2e-106 389.4 515 45.4
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 5.5e-106 389.0 525 45.3
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 9.4e-106 388.3 525 45.3
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.2e-105 387.9 519 45.9
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 2.7e-105 386.7 525 45.5
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 3.6e-105 386.3 525 44.8
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.6e-105 386.3 534 44.9
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 8.0e-105 385.2 506 43.9
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.3e-104 383.6 525 45.1
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 3.9e-104 382.9 519 44.9
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 3.9e-104 382.9 519 44.9
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 1.5e-103 380.9 514 45.1
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 3.3e-103 379.8 534 44.0
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 4.4e-103 379.4 537 41.7
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.3e-102 377.9 522 42.7
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.8e-102 376.7 481 46.4
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 3.7e-102 376.3 517 44.7
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 4.8e-102 375.9 517 44.9
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 2.4e-101 373.6 517 44.3
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 5.3e-101 372.5 549 41.9
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 4.5e-100 369.4 514 44.6
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 7.7e-100 368.6 513 43.1
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.0e-99 368.2 519 43.0
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.7e-99 367.5 513 44.4
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.5e-98 364.4 514 42.8
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.2e-97 361.3 523 42.1
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 6.1e-97 359.0 514 42.8
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 8.0e-97 358.6 482 47.5
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 6.8e-96 355.5 514 43.0
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 6.8e-96 355.5 487 43.9
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 2.0e-95 354.0 498 44.2
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 2.6e-95 353.6 524 42.6
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 3.4e-95 353.2 179 99.4
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.1e-93 348.2 541 40.7
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 3.8e-91 339.7 501 43.3
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 2.0e-87 327.4 525 39.0
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.7e-83 314.3 496 40.9
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.7e-81 306.2 533 36.8
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 6.8e-72 275.8 522 36.0
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 4.4e-71 273.1 526 37.3
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 1.3e-70 271.6 508 36.0
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.7e-68 263.8 515 34.0
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.3e-66 256.5 413 38.7
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 8.1e-65 252.3 230 62.2
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.8e-64 251.1 210 64.3
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.4e-61 241.5 210 61.9
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.5e-55 221.5 470 34.0
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.9e-54 217.2 518 32.2
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.9e-53 214.5 158 64.6
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.9e-53 214.5 523 31.2
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 6.6e-51 206.1 510 30.8
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 3.3e-50 203.8 158 58.9
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 7.3e-50 202.6 134 76.9
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 1.2e-47 195.3 210 51.4
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 1.2e-47 195.3 210 51.4
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.5e-47 194.9 510 29.2
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 2.5e-42 177.6 163 56.4
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 3.3e-42 177.2 127 63.0
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.1e-33 147.9 119 61.3
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.9e-30 137.5 122 56.6
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 7.9e-28 129.4 72 77.8
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.3e-25 122.1 115 47.0
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.3e-25 122.1 112 50.9
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 2.5e-18 97.8 85 61.2
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.0e-15 88.2 63 68.3
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 4.1e-08 63.9 33 75.8


User provided reference genes

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