Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 6.8e-96 354.0 179 100.0
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 3.4e-95 351.7 179 99.4
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 2.2e-70 269.2 181 75.7
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 2.2e-70 269.2 178 76.4
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 2.9e-70 268.9 181 75.7
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 4.9e-70 268.1 184 75.0
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 5.4e-69 264.6 181 75.1
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.9e-66 256.1 168 74.4
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 2.5e-66 255.8 172 76.7
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 2.5e-66 255.8 178 74.2
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 5.6e-66 254.6 182 73.6
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 2.8e-65 252.3 168 73.8
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 6.9e-64 247.7 178 72.5
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 4.5e-63 245.0 173 72.3
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 2.9e-62 242.3 168 70.8
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.5e-61 239.2 184 66.3
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.6e-60 236.5 176 69.9
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.6e-60 236.5 176 69.9
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.1e-58 230.3 178 68.5
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.5e-58 229.2 169 69.2
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 9.6e-58 227.3 178 67.4
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.3e-57 226.9 163 69.3
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 1.6e-57 226.5 166 71.1
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.8e-57 224.9 178 66.9
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 8.2e-57 224.2 155 72.3
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 4.0e-56 221.9 184 65.2
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 6.9e-56 221.1 167 67.1
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.0e-56 220.7 167 67.1
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.2e-55 220.3 171 66.7
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.5e-55 219.9 167 66.5
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.0e-55 219.5 167 67.1
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 2.6e-55 219.2 155 70.3
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 2.6e-55 219.2 169 69.2
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.6e-55 219.2 169 66.9
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 7.6e-55 217.6 180 65.0
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 1.3e-54 216.9 180 64.4
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 2.2e-54 216.1 180 63.9
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 2.9e-54 215.7 167 66.5
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 6.5e-54 214.5 156 69.2
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 8.4e-54 214.2 155 69.0
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 8.4e-54 214.2 181 65.2
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.1e-53 213.8 169 66.3
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.4e-53 213.4 168 66.1
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.9e-53 213.0 155 69.0
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 3.2e-53 212.2 166 65.7
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 4.2e-53 211.8 155 69.7
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 5.5e-53 211.5 166 66.3
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 7.1e-53 211.1 179 62.6
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 9.3e-53 210.7 167 66.5
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.2e-52 210.3 125 80.0
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.2e-52 210.3 177 62.7
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.6e-52 209.9 168 65.5
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.6e-52 209.9 179 63.7
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 3.5e-52 208.8 168 63.7
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 3.5e-52 208.8 160 66.2
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 3.5e-52 208.8 180 63.9
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 4.6e-52 208.4 170 62.4
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.6e-52 208.4 168 64.3
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 6.1e-52 208.0 172 64.0
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 6.1e-52 208.0 167 64.1
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 7.9e-52 207.6 169 66.3
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 7.9e-52 207.6 177 59.9
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 7.9e-52 207.6 176 59.7
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 1.0e-51 207.2 168 62.5
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.3e-51 206.8 168 66.7
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.3e-51 206.8 155 67.1
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 3.0e-51 205.7 168 63.1
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 3.9e-51 205.3 171 65.5
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 5.1e-51 204.9 177 62.1
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 5.1e-51 204.9 155 67.1
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 5.1e-51 204.9 155 67.1
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.7e-51 204.5 168 61.3
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 8.7e-51 204.1 182 62.1
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 8.7e-51 204.1 182 62.1
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 8.7e-51 204.1 155 65.8
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 8.7e-51 204.1 164 64.0
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 8.7e-51 204.1 154 67.5
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 8.7e-51 204.1 166 66.9
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.5e-50 203.4 161 64.6
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.9e-50 203.0 169 60.9
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 2.5e-50 202.6 134 76.9
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 2.5e-50 202.6 181 62.4
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.5e-50 202.6 160 68.8
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 4.3e-50 201.8 164 63.4
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 5.7e-50 201.4 166 65.1
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 7.4e-50 201.1 174 63.2
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 9.7e-50 200.7 167 60.5
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.3e-49 200.3 173 61.8
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.3e-49 200.3 174 60.3
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.3e-49 200.3 180 60.6
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 1.3e-49 200.3 168 62.5
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 2.2e-49 199.5 161 65.8
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.2e-49 199.5 169 62.7
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 3.7e-49 198.7 143 69.9
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.3e-49 198.0 160 64.4
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.3e-49 198.0 173 59.5
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 6.3e-49 198.0 174 59.8
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 6.3e-49 198.0 169 60.9
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 8.2e-49 197.6 173 61.8
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.1e-48 197.2 178 60.1
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.4e-48 196.8 167 59.3
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.4e-48 196.8 152 67.8
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 1.8e-48 196.4 173 63.6
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.4e-48 196.1 169 62.7
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.2e-47 193.7 151 67.5
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.5e-47 193.4 164 65.2
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 2.0e-47 193.0 173 62.4
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 2.0e-47 193.0 173 62.4
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 2.6e-47 192.6 173 62.4
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 3.4e-47 192.2 153 66.0
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 4.5e-47 191.8 161 64.0
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 7.7e-47 191.0 161 64.6
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 7.7e-47 191.0 170 58.8
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 1.0e-46 190.7 173 61.3
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.7e-46 189.9 160 61.9
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 2.2e-46 189.5 161 64.6
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 2.2e-46 189.5 161 64.6
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 2.9e-46 189.1 173 62.4
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 2.9e-46 189.1 173 61.8
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 6.5e-46 188.0 178 59.0
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 8.5e-46 187.6 163 63.2
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.1e-45 187.2 164 63.4
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.5e-45 186.0 173 61.3
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 2.5e-45 186.0 155 64.5
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 3.2e-45 185.7 173 60.7
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 7.2e-45 184.5 178 58.4
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 2.1e-44 183.0 162 63.6
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 3.0e-43 179.1 155 60.0
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 3.0e-43 179.1 155 60.0
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 6.7e-43 177.9 148 61.5
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 8.8e-43 177.6 149 65.1
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.1e-42 177.2 142 62.7
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 6.3e-41 171.4 180 55.0
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 8.2e-41 171.0 169 55.6
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 1.4e-40 170.2 161 59.0
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 2.4e-40 169.5 125 69.6
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 4.5e-39 165.2 155 60.6
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 1.7e-33 146.7 154 56.5
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.7e-33 146.7 130 63.1
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.2e-28 130.6 170 45.9
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 1.4e-27 127.1 108 60.2
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 2.2e-25 119.8 168 46.4
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 7.0e-24 114.8 197 42.6
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.2e-22 109.8 162 42.6
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 6.8e-19 98.2 150 40.7
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 8.8e-19 97.8 85 61.2
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 7.0e-16 88.2 63 68.3
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.0e-14 84.3 156 37.2
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.2e-14 83.2 166 38.0
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.8e-11 73.6 118 42.4
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 4.9e-09 65.5 189 30.7


User provided reference genes

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