Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 0.0e+00 2234.5 1137 100.0
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 0.0e+00 1095.1 1167 52.8
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 8.8e-306 1053.9 1167 51.7
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 4.5e-294 1015.0 1164 49.1
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 1.9e-292 1009.6 1166 49.2
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 5.0e-269 931.8 1159 47.9
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 5.4e-255 885.2 1169 45.7
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 3.5e-254 882.5 1172 43.3
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 3.5e-254 882.5 1172 43.3
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 4.6e-254 882.1 1142 47.0
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 1.0e-253 880.9 1172 43.3
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.2e-251 874.0 1171 43.3
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 1.8e-250 870.2 1172 44.5
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.5e-249 867.1 1172 43.0
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 2.6e-249 866.3 437 99.3
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 2.6e-249 866.3 1176 43.5
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 2.9e-248 862.8 1181 44.8
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 2.7e-246 856.3 1146 43.1
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 1.2e-243 847.4 1167 43.8
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 3.5e-238 829.3 1178 42.6
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 6.0e-238 828.6 1169 43.3
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 6.0e-238 828.6 1178 42.4
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.0e-237 827.8 1183 41.9
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.9e-237 825.9 1164 42.0
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 3.4e-233 812.8 1198 41.0
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 8.2e-219 765.0 1170 40.6
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 1.7e-216 757.3 1174 40.3
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 2.9e-216 756.5 1173 41.0
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 5.5e-215 752.3 1180 40.6
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 3.0e-213 746.5 1165 39.7
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 6.3e-211 738.8 1186 39.8
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.1e-210 738.0 1180 39.2
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.5e-209 734.2 1167 39.8
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 3.4e-201 706.4 1177 37.9
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 7.2e-199 698.7 1159 40.0
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 7.4e-196 688.7 1185 38.4
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.2e-193 681.4 1179 37.9
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 1.7e-192 677.6 1170 37.7
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 3.2e-191 673.3 1168 37.8
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 4.2e-191 672.9 1211 37.2
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 4.2e-191 672.9 1212 37.3
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 8.8e-189 665.2 1185 36.8
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 1.5e-188 664.5 1169 37.2
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 4.5e-185 652.9 1172 37.5
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 4.5e-185 652.9 1172 36.3
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 1.0e-184 651.7 1171 36.0
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 2.9e-184 650.2 1110 38.8
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 3.8e-184 649.8 1078 38.4
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.9e-183 647.5 1184 35.8
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.2e-183 646.4 1174 37.3
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 3.6e-182 643.3 1188 35.7
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.8e-181 641.0 1177 37.0
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 2.0e-180 637.5 1004 40.3
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 2.8e-179 633.6 1170 36.5
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 3.8e-176 623.2 1168 36.9
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.5e-175 621.3 1179 36.2
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 4.2e-175 619.8 1176 36.7
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 9.4e-175 618.6 1173 36.5
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 1.5e-172 611.3 1168 36.7
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 3.4e-172 610.1 1167 36.3
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 1.1e-170 605.1 990 40.2
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.4e-170 604.7 897 40.0
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 7.0e-170 602.4 1263 34.8
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.3e-168 597.4 1175 35.3
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 5.5e-167 592.8 1169 34.5
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 1.6e-166 591.3 1173 34.5
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 3.6e-166 590.1 1173 34.5
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.4e-164 583.2 1176 34.5
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 3.7e-163 580.1 1174 33.5
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 3.7e-163 580.1 1117 35.9
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 1.1e-162 578.6 1181 34.0
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.9e-160 570.1 1169 34.6
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 4.3e-159 566.6 1169 32.8
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 6.1e-158 562.8 1173 33.2
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 4.0e-157 560.1 945 38.5
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 1.5e-156 558.1 1175 33.3
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 5.8e-156 556.2 1175 32.6
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 1.7e-155 554.7 900 37.6
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 4.1e-154 550.1 917 39.1
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 3.0e-152 543.9 1173 32.2
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 8.6e-152 542.3 1029 37.1
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 1.4e-149 535.0 1171 32.2
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 4.4e-148 530.0 1166 32.2
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 9.8e-148 528.9 1173 32.6
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 2.4e-146 524.2 1174 32.9
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 2.7e-145 520.8 1168 32.2
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 7.8e-145 519.2 1173 31.5
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 1.5e-143 515.0 1180 32.4
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.6e-142 511.5 665 44.7
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 2.8e-142 510.8 1209 31.5
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 6.4e-139 499.6 1225 32.7
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 2.7e-137 494.2 1171 30.9
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.1e-125 454.1 986 35.0
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 2.3e-120 438.0 969 32.8
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 4.2e-114 417.2 1259 26.8
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 1.8e-104 385.2 1229 26.4
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 2.3e-104 384.8 441 49.4
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 8.5e-91 339.7 1178 26.7
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.2e-84 319.3 903 31.0
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 8.8e-80 303.1 806 31.0
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 6.5e-75 287.0 275 55.3
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 6.5e-67 260.4 1282 22.5
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 7.2e-66 256.9 1263 23.7
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 3.0e-64 251.5 304 44.7
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.9e-59 235.0 301 44.5
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 2.5e-58 231.9 299 44.1
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 4.2e-58 231.1 301 43.9
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 5.5e-58 230.7 301 43.9
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 2.3e-56 225.3 299 42.8
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 4.7e-49 201.1 422 31.8
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 3.0e-48 198.4 308 38.0
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 5.2e-48 197.6 308 37.7
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 4.4e-47 194.5 236 46.2
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 5.7e-47 194.1 301 38.9
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 1.9e-42 179.1 1141 23.0
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.5e-42 178.7 236 41.5
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 5.4e-37 161.0 167 50.3
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 2.7e-36 158.7 321 33.3
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 2.1e-33 149.1 165 48.5
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.1e-32 146.7 874 23.1
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 5.2e-32 144.4 166 44.6
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 4.4e-31 141.4 167 44.9
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 2.4e-29 135.6 172 41.3
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.5e-28 131.7 166 41.6
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 4.6e-28 131.3 167 42.5
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 2.5e-26 125.6 308 32.5
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 5.6e-26 124.4 130 54.6
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.4e-23 114.8 295 31.5
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 3.5e-20 105.1 269 30.9
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 8.6e-19 100.5 225 29.8
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 9.6e-18 97.1 519 24.3
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 3.6e-17 95.1 409 24.4
Dinv16431 Davidia involucrata HOM05D004959 ORTHO05D005961 4.7e-17 94.7 107 47.7
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 2.0e-15 89.4 96 50.0
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 7.6e-15 87.4 430 24.9
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 3.1e-08 65.5 138 32.6
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 4.0e-08 65.1 48 58.3
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 5.3e-08 64.7 44 63.6
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 5.3e-08 64.7 99 37.4
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 1.2e-07 63.5 44 61.4
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.0e-07 62.8 105 36.2
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 5.8e-07 61.2 62 54.8


User provided reference genes

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