Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 8.7e-25 116.3 65 100.0
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 3.1e-22 107.8 63 95.2
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 1.5e-21 105.5 67 91.0
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 5.8e-21 103.6 65 89.2
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 7.6e-21 103.2 65 87.7
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.3e-20 102.4 65 84.6
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 1.7e-20 102.1 65 87.7
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 2.9e-20 101.3 65 84.6
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.8e-20 100.9 66 87.9
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.8e-20 100.9 65 84.6
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.8e-20 100.9 65 84.6
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 3.8e-20 100.9 66 84.8
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.8e-20 100.9 66 87.9
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 4.9e-20 100.5 65 84.6
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 4.9e-20 100.5 63 87.3
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.9e-20 100.5 65 84.6
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 6.5e-20 100.1 65 83.1
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 1.1e-19 99.4 65 83.1
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.1e-19 99.4 65 83.1
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.1e-19 99.4 65 84.6
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 1.1e-19 99.4 65 84.6
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.1e-19 99.4 65 84.6
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.9e-19 98.6 65 83.1
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 1.9e-19 98.6 63 85.7
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.2e-19 97.4 65 84.6
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 7.1e-19 96.7 68 82.4
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 7.1e-19 96.7 66 84.8
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 9.3e-19 96.3 67 85.1
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 1.2e-18 95.9 60 88.3
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 81.5
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 80.0
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.6e-18 95.5 60 85.0
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.1e-18 95.1 64 84.4
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.1e-18 95.1 66 83.3
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 2.1e-18 95.1 65 80.0
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.7e-18 94.7 66 81.8
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 3.5e-18 94.4 65 80.0
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 3.5e-18 94.4 65 81.5
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 4.6e-18 94.0 64 81.2
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.0e-18 93.6 67 82.1
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.0e-18 93.6 67 82.1
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.0e-18 93.6 63 77.8
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 7.9e-18 93.2 66 80.3
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.0e-17 92.8 66 81.8
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.0e-17 92.8 67 80.6
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 1.0e-17 92.8 60 81.7
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.0e-17 92.8 64 82.8
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 2.3e-17 91.7 65 80.0
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 2.3e-17 91.7 65 80.0
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 2.3e-17 91.7 67 76.1
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 3.0e-17 91.3 64 81.2
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.0e-17 91.3 71 77.5
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.0e-17 91.3 71 77.5
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 3.9e-17 90.9 67 80.6
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 5.1e-17 90.5 67 79.1
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 8.7e-17 89.7 61 83.6
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 8.7e-17 89.7 66 78.8
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 1.1e-16 89.4 64 79.7
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 1.1e-16 89.4 63 76.2
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 1.5e-16 89.0 67 76.1
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.5e-16 89.0 65 76.9
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.5e-16 89.0 68 75.0
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.9e-16 88.6 66 78.8
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.3e-16 87.4 68 75.0
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 5.7e-16 87.0 62 79.0
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 9.6e-16 86.3 59 84.7
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 1.3e-15 85.9 68 75.0
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 1.3e-15 85.9 68 73.5
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 1.6e-15 85.5 65 75.4
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.8e-15 84.7 63 76.2
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 3.7e-15 84.3 70 71.4
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 8.2e-15 83.2 67 76.1
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.8e-14 82.0 66 72.7
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 1.8e-14 82.0 60 81.7
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 3.1e-14 81.3 63 66.7
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 4.1e-14 80.9 66 68.2
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 4.1e-14 80.9 63 66.7
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 9.0e-14 79.7 70 67.1
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 1.5e-13 79.0 65 69.2
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 2.6e-13 78.2 63 65.1
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 2.6e-13 78.2 56 82.1
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 5.9e-13 77.0 59 78.0
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 7.6e-13 76.6 52 86.5
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 1.0e-12 76.3 73 67.1
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 1.7e-12 75.5 63 61.9
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.7e-12 75.5 67 67.2
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.9e-12 74.7 61 63.9
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.9e-12 74.7 61 63.9
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 2.9e-12 74.7 66 60.6
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 2.9e-12 74.7 66 60.6
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 3.8e-12 74.3 65 63.1
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 8.4e-12 73.2 64 64.1
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 8.4e-12 73.2 64 64.1
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 1.1e-11 72.8 64 64.1
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 1.1e-11 72.8 64 64.1
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 1.1e-11 72.8 64 64.1
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.1e-11 72.8 44 90.9
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 1.1e-11 72.8 58 69.0
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 2.5e-11 71.6 63 65.1
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 6.1e-10 67.0 57 71.9
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.3e-09 65.9 54 68.5
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 2.3e-09 65.1 60 60.0
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.1e-09 63.9 58 60.3
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 5.1e-09 63.9 62 66.1
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 6.7e-09 63.5 59 59.3
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 8.7e-09 63.2 54 66.7
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.1e-08 62.8 58 62.1
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 1.1e-08 62.8 58 63.8
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 1.5e-08 62.4 76 56.6
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.5e-08 62.4 56 58.9
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.5e-08 62.4 56 58.9
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.5e-08 62.4 58 60.3
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.5e-08 62.4 54 64.8
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.9e-08 62.0 52 65.4
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 1.9e-08 62.0 60 58.3
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.5e-08 61.6 57 64.9
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 4.3e-08 60.8 54 63.0
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 58.6
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.3e-08 60.8 58 62.1
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 5.7e-08 60.5 57 64.9
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 9.7e-08 59.7 54 61.1
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.6e-07 58.9 55 61.8
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.2e-07 58.5 61 55.7
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 2.2e-07 58.5 55 61.8
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 2.2e-07 58.5 54 61.1
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 2.2e-07 58.5 54 57.4
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 2.8e-07 58.2 57 61.4
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.8e-07 58.2 57 61.4
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.8e-07 58.2 54 59.3
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 2.8e-07 58.2 60 55.0
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 2.8e-07 58.2 60 55.0
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 3.7e-07 57.8 56 62.5
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 4.8e-07 57.4 53 62.3
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 6.3e-07 57.0 74 52.7
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 6.3e-07 57.0 60 56.7
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 8.2e-07 56.6 57 54.4
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 8.2e-07 56.6 58 62.1
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 8.2e-07 56.6 57 54.4
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 8.2e-07 56.6 57 54.4
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.1e-06 56.2 62 53.2
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.1e-06 54.7 55 60.0
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.1e-06 54.7 54 57.4
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 5.3e-06 53.9 58 53.4
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 5.3e-06 53.9 59 54.2
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 6.9e-06 53.5 56 55.4
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 6.9e-06 53.5 54 53.7
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.9e-06 53.5 61 54.1
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 6.9e-06 53.5 61 54.1
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 6.9e-06 53.5 58 56.9
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 9.0e-06 53.1 60 53.3


User provided reference genes

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