Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 1.4e-49 199.1 92 100.0
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 4.1e-12 74.7 42 83.3
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 2.0e-11 72.4 42 81.0
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 1.0e-10 70.1 42 76.2
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.8e-10 68.2 42 73.8
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 3.8e-10 68.2 42 73.8
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 5.0e-10 67.8 42 73.8
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 5.0e-10 67.8 42 73.8
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 6.6e-10 67.4 46 69.6
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 6.6e-10 67.4 42 71.4
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 6.6e-10 67.4 42 73.8
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 8.6e-10 67.0 42 73.8
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 8.6e-10 67.0 42 71.4
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 8.6e-10 67.0 42 71.4
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 8.6e-10 67.0 42 71.4
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.1e-09 66.6 42 71.4
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 1.5e-09 66.2 42 71.4
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 1.5e-09 66.2 42 71.4
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 1.5e-09 66.2 42 71.4
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 1.9e-09 65.9 41 73.2
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.5e-09 65.5 42 69.0
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 2.5e-09 65.5 38 78.9
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 2.5e-09 65.5 40 75.0
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 3.3e-09 65.1 42 71.4
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 3.3e-09 65.1 42 69.0
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 3.3e-09 65.1 42 69.0
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 3.3e-09 65.1 42 69.0
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 4.3e-09 64.7 42 73.8
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 4.3e-09 64.7 42 69.0
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 4.3e-09 64.7 44 68.2
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 5.6e-09 64.3 42 66.7
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 5.6e-09 64.3 42 66.7
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 5.6e-09 64.3 42 69.0
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 5.6e-09 64.3 42 69.0
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 7.3e-09 63.9 40 70.0
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 7.3e-09 63.9 44 65.9
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 7.3e-09 63.9 44 65.9
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 7.3e-09 63.9 42 66.7
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 7.3e-09 63.9 47 63.8
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 7.3e-09 63.9 42 69.0
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 9.5e-09 63.5 44 63.6
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 9.5e-09 63.5 42 69.0
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 9.5e-09 63.5 42 66.7
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 9.5e-09 63.5 42 71.4
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 9.5e-09 63.5 39 69.2
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 9.5e-09 63.5 40 72.5
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 1.2e-08 63.2 42 66.7
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 1.2e-08 63.2 42 69.0
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 1.2e-08 63.2 42 69.0
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 1.2e-08 63.2 42 66.7
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 1.6e-08 62.8 77 42.9
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 2.1e-08 62.4 42 64.3
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 2.1e-08 62.4 42 64.3
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 2.1e-08 62.4 42 69.0
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.1e-08 62.4 46 60.9
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 2.1e-08 62.4 40 70.0
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 2.1e-08 62.4 41 65.9
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 2.1e-08 62.4 42 61.9
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 2.1e-08 62.4 42 61.9
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 2.8e-08 62.0 42 66.7
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.8e-08 62.0 39 69.2
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.8e-08 62.0 39 69.2
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 2.8e-08 62.0 42 66.7
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 2.8e-08 62.0 40 67.5
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 3.6e-08 61.6 42 66.7
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 3.6e-08 61.6 39 69.2
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.6e-08 61.6 39 69.2
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 3.6e-08 61.6 39 69.2
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 4.7e-08 61.2 45 64.4
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 4.7e-08 61.2 40 67.5
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 4.7e-08 61.2 42 64.3
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 6.1e-08 60.8 43 60.5
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 6.1e-08 60.8 42 61.9
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 6.1e-08 60.8 42 66.7
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 6.1e-08 60.8 42 64.3
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 6.1e-08 60.8 41 63.4
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 6.1e-08 60.8 40 70.0
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 8.0e-08 60.5 42 61.9
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 8.0e-08 60.5 38 73.7
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 8.0e-08 60.5 38 73.7
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 8.0e-08 60.5 42 66.7
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 1.0e-07 60.1 42 64.3
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 1.0e-07 60.1 42 66.7
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 1.0e-07 60.1 42 59.5
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 1.0e-07 60.1 42 61.9
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 1.0e-07 60.1 40 65.0
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 1.4e-07 59.7 42 61.9
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 1.4e-07 59.7 42 61.9
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 1.4e-07 59.7 42 61.9
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.4e-07 59.7 42 64.3
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 1.4e-07 59.7 42 66.7
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 1.4e-07 59.7 42 57.1
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 1.8e-07 59.3 42 64.3
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 1.8e-07 59.3 42 64.3
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 2.3e-07 58.9 42 59.5
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 2.3e-07 58.9 42 64.3
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.3e-07 58.9 56 51.8
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 3.0e-07 58.5 42 59.5
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 4.0e-07 58.2 42 57.1
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 4.0e-07 58.2 42 61.9
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 4.0e-07 58.2 40 67.5
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 4.0e-07 58.2 42 64.3
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 4.0e-07 58.2 42 59.5
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.0e-07 58.2 42 64.3
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.0e-07 58.2 42 64.3
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 4.0e-07 58.2 42 64.3
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 4.0e-07 58.2 42 59.5
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 5.2e-07 57.8 42 59.5
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 6.8e-07 57.4 42 61.9
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 6.8e-07 57.4 42 59.5
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 6.8e-07 57.4 42 61.9
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 6.8e-07 57.4 42 59.5
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 6.8e-07 57.4 42 59.5
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.2e-06 56.6 42 61.9
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.2e-06 56.6 42 61.9
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 1.2e-06 56.6 42 61.9
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 1.5e-06 56.2 42 57.1
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 4.4e-06 54.7 42 57.1
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 4.4e-06 54.7 42 64.3
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 5.7e-06 54.3 58 44.8


User provided reference genes

Program Settings