Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 3.1e-87 325.1 164 100.0
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 4.4e-81 304.7 164 92.7
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.9e-76 289.3 164 85.4
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 2.7e-75 285.4 164 85.4
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 1.4e-74 283.1 164 83.5
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.8e-72 275.4 164 81.7
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.8e-72 275.4 164 81.7
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 1.8e-71 272.7 164 81.1
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.4e-71 272.3 164 82.9
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.4e-71 272.3 164 82.9
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 1.3e-69 266.5 164 79.9
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.3e-69 266.5 164 74.4
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 3.8e-69 265.0 164 75.0
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 5.0e-69 264.6 164 79.3
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 8.5e-69 263.8 164 77.4
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.5e-68 263.1 164 76.8
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 1.9e-68 262.7 164 77.4
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 2.5e-68 262.3 164 76.8
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 4.2e-68 261.5 164 76.2
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 5.5e-68 261.2 164 77.4
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 5.5e-68 261.2 164 78.0
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 7.2e-68 260.8 164 76.2
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 7.2e-68 260.8 164 75.6
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 2.7e-67 258.8 164 78.0
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 2.7e-67 258.8 164 72.6
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 4.7e-67 258.1 164 75.0
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 8.0e-67 257.3 164 75.6
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 8.0e-67 257.3 164 75.6
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 8.0e-67 257.3 164 76.2
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 1.0e-66 256.9 164 77.4
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 1.4e-66 256.5 164 76.8
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 2.3e-66 255.8 164 78.0
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 2.3e-66 255.8 164 77.4
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 3.0e-66 255.4 164 75.6
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 3.0e-66 255.4 164 76.8
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 4.0e-66 255.0 164 74.4
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 73.8
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 5.2e-66 254.6 164 74.4
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 6.7e-66 254.2 159 74.8
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 8.8e-66 253.8 164 72.6
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 1.2e-65 253.4 164 72.6
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 1.5e-65 253.1 164 74.4
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 2.0e-65 252.7 164 72.0
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 2.6e-65 252.3 164 75.0
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 4.4e-65 251.5 164 73.2
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 4.4e-65 251.5 164 73.2
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 5.7e-65 251.1 166 74.1
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 5.7e-65 251.1 162 72.8
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 72.6
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 1.7e-64 249.6 166 73.5
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 75.6
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 72.0
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 73.2
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 8.2e-64 247.3 166 72.3
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 72.6
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 72.0
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 1.8e-63 246.1 164 70.7
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.8e-63 246.1 164 71.3
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 2.4e-63 245.7 188 67.0
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 5.3e-63 244.6 164 72.0
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 69.5
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 71.3
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 70.1
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 72.6
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 1.2e-62 243.4 164 70.1
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 1.6e-62 243.0 164 73.2
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 70.7
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 70.7
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 70.1
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 7.7e-62 240.7 159 72.3
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 70.1
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 68.9
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 70.7
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 69.5
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 68.9
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 68.3
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 70.7
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 70.7
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 68.9
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 68.9
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 68.9
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 5.0e-61 238.0 164 68.3
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 68.9
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 68.9
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 68.9
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 67.7
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 68.3
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 69.5
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 68.3
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 68.9
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 68.3
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 4.2e-60 235.0 164 64.6
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 67.7
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 68.9
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 8.8e-58 227.3 173 64.7
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 2.0e-57 226.1 164 65.9
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 4.4e-57 224.9 185 61.1
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 5.7e-57 224.6 159 67.9
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 7.5e-57 224.2 193 59.1
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 7.5e-57 224.2 164 65.9
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 2.8e-56 222.2 191 58.6
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 4.8e-56 221.5 164 64.6
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 8.3e-56 220.7 164 67.7
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 8.3e-56 220.7 174 63.8
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 5.4e-55 218.0 171 64.3
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 7.7e-54 214.2 162 61.1
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 3.7e-48 195.3 167 61.7
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 6.3e-48 194.5 164 62.2
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 8.3e-48 194.1 164 54.9
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 1.8e-47 193.0 133 70.7
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 1.6e-46 189.9 167 60.5
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.6e-46 189.9 132 68.2
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 3.5e-46 188.7 170 56.5
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 3.5e-46 188.7 170 56.5
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 3.8e-45 185.3 221 50.2
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 2.4e-39 166.0 117 71.8
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 8.6e-37 157.5 168 46.4
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 1.1e-36 157.1 169 48.5
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 5.6e-36 154.8 94 80.9
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.6e-35 153.3 96 80.2
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 3.6e-35 152.1 168 48.8
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.1e-31 140.6 122 50.8
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 2.4e-31 139.4 83 81.9
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 5.4e-31 138.3 167 45.5
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 7.0e-31 137.9 91 78.0
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 9.2e-31 137.5 82 81.7
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 3.0e-29 132.5 96 64.6
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 3.9e-29 132.1 83 75.9
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 5.0e-29 131.7 82 73.2
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 6.8e-26 121.3 104 65.4
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 1.4e-23 113.6 118 50.0
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 1.9e-23 113.2 66 80.3
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 7.8e-22 107.8 69 73.9
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 2.4e-18 96.3 82 54.9
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 4.9e-16 88.6 119 35.3
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 4.2e-15 85.5 57 59.6
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 1.6e-14 83.6 47 80.9
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 2.7e-14 82.8 84 54.8
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 4.6e-14 82.0 68 66.2
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 2.3e-13 79.7 46 73.9
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 6.6e-13 78.2 48 79.2
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 1.9e-12 76.6 77 57.1
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 2.4e-10 69.7 51 66.7
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 9.0e-10 67.8 47 59.6
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 6.0e-06 55.1 32 75.0


User provided reference genes

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