Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1667.9 893 100.0
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1275.0 893 77.5
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1205.7 890 73.7
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1204.5 890 74.0
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1204.1 890 73.3
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 0.0e+00 1202.6 896 72.4
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 0.0e+00 1201.0 964 69.9
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 0.0e+00 1199.1 893 74.0
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1182.9 892 73.2
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1182.5 896 73.5
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1173.3 903 72.4
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1164.8 895 70.8
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1145.2 859 73.6
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1130.9 891 69.1
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1119.4 891 68.7
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1116.3 891 69.0
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1114.4 887 68.5
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1112.1 890 68.7
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1107.0 894 68.5
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1106.7 890 69.8
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1106.3 904 67.6
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1106.3 900 67.7
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1105.5 889 68.4
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1102.8 891 68.0
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1091.6 894 66.3
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1090.1 836 70.8
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1088.9 888 66.8
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1088.6 889 66.7
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1087.8 895 66.7
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1087.0 888 66.7
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1086.2 894 65.8
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1085.5 888 66.4
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1084.3 894 65.7
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1083.6 888 66.6
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1082.8 888 66.3
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1081.2 895 67.6
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1081.2 900 67.3
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1079.3 894 65.3
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1078.9 909 66.8
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1076.6 897 68.9
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 897 68.8
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 891 67.5
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 880 65.9
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 1.2e-311 1072.8 886 66.3
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 7.3e-311 1070.5 892 64.8
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 9.2e-311 1070.1 904 65.5
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 1.2e-310 1069.7 879 68.1
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 1.6e-310 1069.3 867 67.5
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 3.5e-310 1068.1 888 67.5
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 6.0e-310 1067.4 844 67.3
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 1.8e-309 1065.8 894 67.3
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 2.3e-309 1065.4 888 67.8
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 1.1e-308 1063.1 879 67.8
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 1.5e-308 1062.8 888 67.3
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 3.3e-308 1061.6 890 66.3
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 3.7e-307 1058.1 897 66.9
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 1.4e-306 1056.2 886 65.9
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 4.5e-305 1051.2 894 64.5
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 5.8e-305 1050.8 844 67.8
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 7.6e-305 1050.4 892 65.0
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 2.9e-304 1048.5 807 69.9
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 3.8e-304 1048.1 836 67.1
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 3.5e-302 1041.6 884 66.7
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 6.0e-302 1040.8 890 67.3
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 1.8e-301 1039.3 894 63.8
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 3.0e-301 1038.5 895 64.6
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 3.9e-301 1038.1 894 63.3
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 4.3e-300 1034.6 891 66.3
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.8e-299 1031.9 893 64.7
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 3.7e-299 1031.6 889 64.6
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 8.5e-296 1020.4 882 64.9
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 2.5e-295 1018.8 894 63.9
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 5.5e-295 1017.7 892 63.7
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 1.6e-294 1016.1 894 65.9
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 1.0e-293 1013.4 934 63.2
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 2.3e-293 1012.3 885 65.0
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 5.1e-293 1011.1 886 63.8
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 6.7e-293 1010.7 1006 58.3
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 1.1e-292 1010.0 892 63.1
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 1.1e-292 1010.0 894 62.6
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 9.7e-292 1006.9 889 62.9
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 1.3e-291 1006.5 896 63.3
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 1.4e-290 1003.0 893 63.2
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 7.7e-289 997.3 886 63.1
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 1.7e-288 996.1 883 62.6
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 3.8e-288 995.0 886 63.0
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 1.1e-287 993.4 887 62.7
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 4.2e-287 991.5 887 62.2
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 9.4e-287 990.3 883 62.6
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 2.1e-286 989.2 883 62.5
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 1.3e-283 979.9 885 61.8
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 2.6e-281 972.2 805 66.0
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 1.7e-280 969.5 888 59.0
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 1.8e-277 959.5 782 66.8
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 8.8e-277 957.2 803 66.7
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 2.0e-276 956.1 697 71.7
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 9.7e-276 953.7 863 64.9
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 4.1e-274 948.3 888 60.8
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 9.1e-274 947.2 697 71.2
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 2.9e-272 942.2 721 68.4
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 6.5e-272 941.0 687 73.2
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 1.5e-268 929.9 887 57.3
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 3.1e-266 922.2 715 67.4
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 3.5e-265 918.7 620 77.3
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 5.5e-263 911.4 891 56.7
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.2e-260 903.7 868 59.7
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 1.4e-258 896.7 837 55.6
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 3.6e-254 882.1 670 69.0
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.6e-246 856.7 905 51.7
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 4.0e-245 852.0 899 51.5
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 8.3e-235 817.8 838 51.6
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 8.9e-221 771.2 835 49.5
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 7.8e-217 758.1 915 54.3
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 1.7e-216 756.9 895 54.3
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 2.1e-193 680.2 518 74.1
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 7.4e-191 671.8 477 74.0
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.5e-148 530.0 490 61.8
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 1.6e-129 468.0 318 77.7
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 1.8e-128 464.5 305 75.7
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.3e-120 437.6 262 81.7
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 5.2e-120 436.4 811 34.3
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 1.7e-118 431.4 839 33.8
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.3e-112 411.0 394 58.1
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 1.4e-93 348.6 380 59.2
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 1.5e-90 338.6 907 28.4
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.4e-80 304.7 302 57.3
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 6.1e-68 263.5 399 47.4
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 1.4e-56 225.7 141 80.9
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 1.7e-49 202.2 227 54.6
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 1.3e-46 192.6 126 77.8
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 4.4e-42 177.6 132 68.2
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 9.7e-42 176.4 142 71.1
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 8.0e-36 156.8 121 71.9
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 5.7e-34 150.6 147 54.4
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.7e-33 149.1 147 54.4
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.8e-33 148.3 160 56.2
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 8.6e-14 83.6 77 61.0
unitig_37.g12849 Utricularia gibba HOM05D005394 ORTHO05D418089 3.1e-11 75.1 95 52.6
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 2.0e-10 72.4 77 48.1


User provided reference genes

Program Settings