Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 6.0e-138 494.2 254 100.0
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 2.4e-78 296.2 223 68.2
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 2.7e-74 282.7 228 64.0
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.8e-73 280.0 223 65.5
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 2.8e-71 272.7 223 63.2
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 5.4e-70 268.5 225 62.2
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.3e-68 263.8 222 59.9
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 2.9e-68 262.7 222 62.2
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 3.2e-67 259.2 223 57.0
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 5.5e-67 258.5 226 58.8
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 5.5e-67 258.5 226 59.3
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.6e-66 256.9 226 60.2
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 1.6e-66 256.9 223 57.0
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 1.6e-66 256.9 222 59.9
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 2.1e-66 256.5 222 57.7
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 8.0e-66 254.6 226 57.5
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 1.8e-65 253.4 226 58.8
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 3.0e-65 252.7 226 57.5
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 4.0e-65 252.3 222 56.3
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 5.2e-65 251.9 226 56.2
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 2.0e-64 250.0 226 57.5
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 4.4e-64 248.8 226 54.4
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 4.4e-64 248.8 222 59.0
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 9.8e-64 247.7 222 59.0
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 4.9e-63 245.4 226 55.3
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 6.3e-63 245.0 227 56.4
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 1.8e-62 243.4 227 54.6
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 3.1e-62 242.7 221 55.2
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 3.1e-62 242.7 226 54.0
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 5.4e-62 241.9 226 54.9
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 7.0e-62 241.5 226 54.9
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 9.2e-62 241.1 226 55.3
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 1.2e-61 240.7 226 54.9
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 1.2e-61 240.7 226 54.4
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.7e-61 239.6 220 56.4
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 3.5e-61 239.2 223 58.3
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.5e-61 239.2 225 55.1
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 5.9e-61 238.4 223 52.9
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 5.9e-61 238.4 226 54.9
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.0e-60 237.7 226 54.4
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 1.0e-60 237.7 222 52.7
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 1.7e-60 236.9 223 54.3
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 5.0e-60 235.3 226 54.0
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 5.0e-60 235.3 239 53.1
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 5.0e-60 235.3 226 51.3
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.5e-59 233.8 223 52.9
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 1.5e-59 233.8 227 56.8
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 1.9e-59 233.4 226 53.1
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 5.6e-59 231.9 223 53.8
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 7.3e-59 231.5 231 52.8
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 2.1e-58 229.9 226 52.7
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 2.1e-58 229.9 226 52.2
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 2.1e-58 229.9 227 52.0
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 3.6e-58 229.2 226 52.7
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 4.7e-58 228.8 227 50.7
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 6.1e-58 228.4 226 54.4
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 8.0e-58 228.0 224 56.2
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 8.0e-58 228.0 235 51.1
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 8.0e-58 228.0 223 53.4
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 1.8e-57 226.9 223 50.7
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 2.3e-57 226.5 227 51.5
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 6.8e-57 224.9 222 50.9
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 8.9e-57 224.6 226 51.3
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.5e-56 223.8 227 54.2
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.0e-56 223.4 227 54.6
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 3.4e-56 222.6 223 50.7
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 4.4e-56 222.2 189 60.8
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 4.4e-56 222.2 227 50.2
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 5.7e-56 221.9 227 50.7
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 5.7e-56 221.9 223 50.2
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 5.7e-56 221.9 223 50.2
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 1.7e-55 220.3 228 51.3
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 1.7e-55 220.3 210 55.2
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 2.2e-55 219.9 227 50.2
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 2.9e-55 219.5 227 51.1
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 4.9e-55 218.8 227 49.8
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 8.3e-55 218.0 223 49.8
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 5.4e-54 215.3 221 48.9
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 5.4e-54 215.3 196 58.2
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 1.6e-53 213.8 228 49.1
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 2.0e-53 213.4 228 51.3
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 2.0e-53 213.4 223 49.8
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 4.6e-53 212.2 227 49.8
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 5.9e-53 211.8 225 49.3
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 7.8e-53 211.5 231 48.5
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 7.8e-53 211.5 211 55.0
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.0e-52 211.1 198 54.5
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 1.3e-52 210.7 227 49.3
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 1.7e-52 210.3 230 48.3
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 3.9e-52 209.1 222 50.5
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.0e-52 208.8 226 47.3
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 5.0e-52 208.8 226 47.3
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 5.0e-52 208.8 198 54.0
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 8.6e-52 208.0 227 48.5
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 8.6e-52 208.0 227 48.0
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 8.6e-52 208.0 220 49.1
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 8.6e-52 208.0 227 47.6
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 1.5e-51 207.2 227 48.9
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 2.5e-51 206.5 229 46.7
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 5.6e-51 205.3 227 48.5
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 7.3e-51 204.9 226 47.3
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 9.5e-51 204.5 188 55.9
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 9.5e-51 204.5 188 55.9
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 1.2e-50 204.1 227 48.0
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 1.2e-50 204.1 227 48.0
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 1.6e-50 203.8 204 53.9
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 1.4e-49 200.7 252 46.0
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 1.8e-49 200.3 226 48.7
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 4.0e-49 199.1 221 49.3
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 4.0e-49 199.1 266 47.4
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 4.0e-49 199.1 207 52.7
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 8.9e-49 198.0 226 46.5
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 1.2e-48 197.6 231 48.1
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 1.2e-48 197.6 231 48.1
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 2.0e-48 196.8 240 45.0
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 2.6e-48 196.4 246 44.3
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 2.6e-48 196.4 235 46.0
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 5.8e-48 195.3 182 57.1
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 7.5e-48 194.9 227 44.5
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.9e-47 193.0 223 47.1
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.9e-47 193.0 223 47.1
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 5.4e-46 188.7 229 45.9
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 2.7e-45 186.4 215 47.4
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 1.1e-43 181.0 223 43.9
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 1.1e-43 181.0 230 43.5
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 7.3e-43 178.3 164 58.5
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 1.2e-42 177.6 227 44.5
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 2.1e-42 176.8 198 48.0
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 2.8e-42 176.4 162 61.1
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 6.2e-42 175.3 198 47.5
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 9.8e-40 167.9 194 47.4
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.9e-39 166.4 194 46.9
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 1.1e-38 164.5 172 50.6
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 1.2e-37 161.0 223 43.5
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 1.1e-35 154.5 206 43.7
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 7.1e-30 135.2 97 63.9
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 4.6e-29 132.5 237 32.5
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 7.8e-29 131.7 175 42.9
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 5.6e-27 125.6 143 51.0
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.4e-25 120.9 96 58.3
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 6.4e-23 112.1 128 47.7
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 1.4e-22 110.9 88 58.0
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 3.2e-22 109.8 96 54.2
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 3.2e-22 109.8 187 36.9
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 4.6e-21 105.9 134 44.0
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 1.5e-19 100.9 183 35.0
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 4.3e-19 99.4 86 59.3
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 1.4e-17 94.4 73 58.9
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 1.4e-14 84.3 113 38.9
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 2.7e-13 80.1 79 49.4
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 4.0e-09 66.2 53 62.3


User provided reference genes

Program Settings