Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 3.0e-58 228.4 123 100.0
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 2.7e-27 125.6 133 63.9
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 4.8e-16 88.2 125 53.6
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 1.8e-15 86.3 127 52.8
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 3.1e-15 85.5 122 44.3
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 4.1e-15 85.1 124 50.8
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 5.9e-14 81.3 122 50.0
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.0e-13 80.5 122 46.7
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 6.5e-13 77.8 122 49.2
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 1.1e-12 77.0 122 50.8
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 1.1e-12 77.0 123 49.6
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 1.4e-12 76.6 126 45.2
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 1.4e-12 76.6 127 48.0
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 3.2e-12 75.5 123 44.7
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 4.2e-12 75.1 116 47.4
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 5.5e-12 74.7 125 48.0
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 7.2e-12 74.3 124 48.4
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 1.2e-11 73.6 80 56.2
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 2.7e-11 72.4 126 49.2
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 3.6e-11 72.0 126 49.2
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 3.6e-11 72.0 126 49.2
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 7.9e-11 70.9 61 63.9
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 1.0e-10 70.5 67 61.2
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 1.0e-10 70.5 68 57.4
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 1.0e-10 70.5 61 63.9
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 1.0e-10 70.5 128 44.5
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 1.0e-10 70.5 62 62.9
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 1.8e-10 69.7 125 44.8
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 2.3e-10 69.3 123 43.9
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 2.3e-10 69.3 124 45.2
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 3.0e-10 68.9 66 60.6
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 3.0e-10 68.9 66 60.6
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 3.0e-10 68.9 126 48.4
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 3.9e-10 68.6 127 44.1
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 3.9e-10 68.6 59 61.0
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 6.7e-10 67.8 126 45.2
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 8.8e-10 67.4 62 56.5
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 8.8e-10 67.4 68 57.4
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 1.1e-09 67.0 57 61.4
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 1.5e-09 66.6 79 51.9
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 1.5e-09 66.6 123 45.5
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 1.5e-09 66.6 55 63.6
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 2.0e-09 66.2 60 61.7
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 2.0e-09 66.2 62 56.5
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 2.0e-09 66.2 74 50.0
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 2.0e-09 66.2 63 57.1
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 2.0e-09 66.2 122 45.1
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 2.6e-09 65.9 59 59.3
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 3.3e-09 65.5 71 52.1
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 3.3e-09 65.5 51 66.7
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 4.4e-09 65.1 59 59.3
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 4.4e-09 65.1 67 56.7
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 4.4e-09 65.1 105 49.5
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 4.4e-09 65.1 78 51.3
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 4.4e-09 65.1 122 45.9
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 4.4e-09 65.1 122 45.9
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 5.7e-09 64.7 57 59.6
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 5.7e-09 64.7 52 65.4
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 5.7e-09 64.7 77 51.9
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 5.7e-09 64.7 116 48.3
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 7.4e-09 64.3 60 58.3
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 7.4e-09 64.3 52 63.5
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 9.7e-09 63.9 62 54.8
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 9.7e-09 63.9 60 56.7
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 9.7e-09 63.9 51 64.7
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 2.2e-08 62.8 54 61.1
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 2.2e-08 62.8 59 57.6
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 2.2e-08 62.8 56 62.5
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 2.2e-08 62.8 52 63.5
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 2.2e-08 62.8 121 43.8
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 2.2e-08 62.8 57 57.9
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 2.8e-08 62.4 55 60.0
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 3.7e-08 62.0 59 55.9
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 3.7e-08 62.0 59 57.6
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 4.8e-08 61.6 55 60.0
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 4.8e-08 61.6 55 60.0
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 6.3e-08 61.2 51 62.7
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 6.3e-08 61.2 52 59.6
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 6.3e-08 61.2 118 45.8
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 6.3e-08 61.2 48 64.6
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 8.2e-08 60.8 61 52.5
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 1.1e-07 60.5 51 60.8
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 1.1e-07 60.5 48 66.7
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 1.4e-07 60.1 55 60.0
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 1.4e-07 60.1 55 60.0
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 1.4e-07 60.1 55 60.0
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 1.4e-07 60.1 55 60.0
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 1.4e-07 60.1 59 55.9
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 1.4e-07 60.1 58 53.4
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 1.4e-07 60.1 60 53.3
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 1.4e-07 60.1 59 54.2
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 2.4e-07 59.3 60 55.0
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 2.4e-07 59.3 54 61.1
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 2.4e-07 59.3 71 49.3
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 3.1e-07 58.9 125 37.6
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 3.1e-07 58.9 54 59.3
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 4.1e-07 58.5 120 43.3
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 4.1e-07 58.5 61 52.5
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 4.1e-07 58.5 66 50.0
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 5.3e-07 58.2 54 55.6
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 5.3e-07 58.2 58 55.2
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 7.0e-07 57.8 123 40.7
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 7.0e-07 57.8 53 60.4
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 9.1e-07 57.4 53 56.6
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 9.1e-07 57.4 64 46.9
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 1.2e-06 57.0 123 41.5
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 1.2e-06 57.0 55 56.4
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 2.0e-06 56.2 58 55.2
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 2.6e-06 55.8 53 56.6
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.6e-06 55.8 49 59.2
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 3.4e-06 55.5 116 42.2
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 5.9e-06 54.7 53 54.7
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 5.9e-06 54.7 53 56.6
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 5.9e-06 54.7 124 41.9
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 5.9e-06 54.7 53 56.6
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 7.7e-06 54.3 121 40.5
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 7.7e-06 54.3 55 50.9


User provided reference genes

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