Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu020465.1 Olea europaea HOM05D001006 ORTHO05D043306 9.9e-32 139.4 67 100.0
THA.LOC104816776 Tarenaya hassleriana HOM05D001006 ORTHO05D000868 1.9e-11 72.0 43 74.4
Oeu000748.2 Olea europaea HOM05D001006 ORTHO05D000868 1.3e-10 69.3 41 73.2
Aa31LG1G4860 Aethionema arabicum HOM05D001006 ORTHO05D000868 2.1e-10 68.6 37 83.8
MSTRG.24398 Avicennia marina HOM05D001006 ORTHO05D000868 2.1e-10 68.6 44 68.2
MSTRG.25011 Avicennia marina HOM05D001006 ORTHO05D000868 2.8e-10 68.2 44 65.9
QL12p040803 Quercus lobata HOM05D001006 ORTHO05D000868 3.7e-10 67.8 59 54.2
Migut.N02809 Erythranthe guttata HOM05D001006 ORTHO05D000868 4.8e-10 67.4 41 70.7
Cfa013394 Carpinus fangiana HOM05D001006 ORTHO05D000868 8.2e-10 66.6 40 72.5
RcHm_v2.0_Chr6g0306871 Rosa chinensis HOM05D001006 ORTHO05D000868 1.1e-09 66.2 40 72.5
Cpa.g.sc160.17 Carica papaya HOM05D001006 ORTHO05D000868 1.4e-09 65.9 41 65.9
CANSAT80G1443 Cannabis sativa HOM05D001006 ORTHO05D000868 2.4e-09 65.1 35 82.9
GSVIVG01009271001 Vitis vinifera HOM05D001006 ORTHO05D000868 2.4e-09 65.1 41 70.7
Potri.002G113000 Populus trichocarpa HOM05D001006 ORTHO05D000868 3.1e-09 64.7 41 70.7
TWI56G0285 Tripterygium wilfordii HOM05D001006 ORTHO05D000868 3.1e-09 64.7 41 70.7
FvH4_2g35100 Fragaria vesca HOM05D001006 ORTHO05D000868 4.0e-09 64.3 40 70.0
FAN15G1652 Fragaria x ananassa HOM05D001006 ORTHO05D000868 4.0e-09 64.3 40 70.0
FAN20G2370 Fragaria x ananassa HOM05D001006 ORTHO05D000868 4.0e-09 64.3 40 70.0
FAN27G0337 Fragaria x ananassa HOM05D001006 ORTHO05D000868 4.0e-09 64.3 40 70.0
Atru.chr13.904 Acer truncatum HOM05D001006 ORTHO05D000868 5.3e-09 63.9 41 68.3
Sp1g08690 Schrenkiella parvula HOM05D001006 ORTHO05D000868 5.3e-09 63.9 37 75.7
C08p13370 Brassica napus HOM05D001006 ORTHO05D000868 9.0e-09 63.2 37 73.0
BolC8t48967H Brassica oleracea HOM05D001006 ORTHO05D000868 9.0e-09 63.2 37 73.0
CiPaw.07G201200 Carya illinoinensis HOM05D001006 ORTHO05D000868 9.0e-09 63.2 41 63.4
CARHR010150 Cardamine hirsuta HOM05D001006 ORTHO05D000868 1.2e-08 62.8 37 73.0
VMungo1309G0383 Vigna mungo HOM05D001006 ORTHO05D000868 1.5e-08 62.4 45 64.4
Actinidia19279 Actinidia chinensis HOM05D001006 ORTHO05D000868 2.0e-08 62.0 35 71.4
QL12p040788 Quercus lobata HOM05D001006 ORTHO05D000868 2.0e-08 62.0 35 77.1
BcaC07g38563 Brassica carinata HOM05D001006 ORTHO05D000868 2.6e-08 61.6 37 73.0
A08p34220 Brassica napus HOM05D001006 ORTHO05D000868 2.6e-08 61.6 37 70.3
BraA08t35334Z Brassica rapa HOM05D001006 ORTHO05D000868 2.6e-08 61.6 37 70.3
Carub.0001s0946 Capsella rubella HOM05D001006 ORTHO05D000868 2.6e-08 61.6 37 70.3
MD08G1108500 Malus domestica HOM05D001006 ORTHO05D000868 2.6e-08 61.6 40 65.0
Rhsim06G0066800 Rhododendron simsii HOM05D001006 ORTHO05D000868 2.6e-08 61.6 43 60.5
Aqoxy6G01534 Aquilegia oxysepala HOM05D001006 ORTHO05D000868 3.4e-08 61.2 35 77.1
Ciclev10001340m.g Citrus clementina HOM05D001006 ORTHO05D000868 3.4e-08 61.2 41 68.3
MD15G1089000 Malus domestica HOM05D001006 ORTHO05D000868 3.4e-08 61.2 40 65.0
vmacro21397 Vaccinium macrocarpon HOM05D001006 ORTHO05D000868 3.4e-08 61.2 42 64.3
AT1G10040 Arabidopsis thaliana HOM05D001006 ORTHO05D000868 4.5e-08 60.8 35 74.3
AL1G20740 Arabidopsis lyrata HOM05D001006 ORTHO05D000868 5.8e-08 60.5 37 70.3
ECA247G0492 Erigeron canadensis HOM05D001006 ORTHO05D000868 5.8e-08 60.5 36 66.7
Thhalv10007805m.g Eutrema salsugineum HOM05D001006 ORTHO05D000868 5.8e-08 60.5 37 70.3
Hma1.2p1_1078F.1_g254790 Hydrangea macrophylla HOM05D001006 ORTHO05D000868 5.8e-08 60.5 35 68.6
Lalb_Chr08g0242851 Lupinus albus HOM05D001006 ORTHO05D000868 5.8e-08 60.5 40 65.0
PGSC0003DMG400004933 Solanum tuberosum HOM05D001006 ORTHO05D000868 5.8e-08 60.5 38 68.4
TWI12G0428 Tripterygium wilfordii HOM05D001006 ORTHO05D000868 7.6e-08 60.1 38 65.8
TAR383G0605 Trochodendron aralioides HOM05D001006 ORTHO05D000868 7.6e-08 60.1 38 68.4
HanXRQChr02g0045981 Helianthus annuus HOM05D001006 ORTHO05D000868 1.0e-07 59.7 36 69.4
Nn5g30702 Nelumbo nucifera HOM05D001006 ORTHO05D000868 1.0e-07 59.7 41 68.3
TAR625G1224 Trochodendron aralioides HOM05D001006 ORTHO05D000868 1.0e-07 59.7 40 65.0
Ca_15563_v3 Cicer arietinum L. HOM05D001006 ORTHO05D000868 1.3e-07 59.3 35 74.3
Eucgr.F02203 Eucalyptus grandis HOM05D001006 ORTHO05D000868 1.3e-07 59.3 41 63.4
Gohir.A02G079500 Gossypium hirsutum HOM05D001006 ORTHO05D000868 1.3e-07 59.3 38 71.1
Gohir.D02G087400 Gossypium hirsutum HOM05D001006 ORTHO05D000868 1.3e-07 59.3 38 71.1
Gorai.005G098000 Gossypium raimondii HOM05D001006 ORTHO05D000868 1.3e-07 59.3 38 71.1
Solyc04g077180.3 Solanum lycopersicum HOM05D001006 ORTHO05D000868 1.3e-07 59.3 38 65.8
Sopen00g005810 Solanum pennellii HOM05D001006 ORTHO05D000868 1.3e-07 59.3 38 65.8
Sopen00g005970 Solanum pennellii HOM05D001006 ORTHO05D000868 1.3e-07 59.3 38 65.8
TAR628G1343 Trochodendron aralioides HOM05D001006 ORTHO05D000868 1.3e-07 59.3 41 61.0
ECA232G1594 Erigeron canadensis HOM05D001006 ORTHO05D000868 1.7e-07 58.9 58 46.6
Prupe.1G443100 Prunus persica HOM05D001006 ORTHO05D000868 1.7e-07 58.9 35 71.4
TPR.G12420 Trifolium pratense HOM05D001006 ORTHO05D000868 1.7e-07 58.9 35 74.3
MSTRG.6195 Avicennia marina HOM05D001006 ORTHO05D000868 2.2e-07 58.5 38 68.4
MD13G1265600 Malus domestica HOM05D001006 ORTHO05D000868 2.2e-07 58.5 38 65.8
MD16G1266100 Malus domestica HOM05D001006 ORTHO05D000868 2.2e-07 58.5 38 65.8
Phvul.009G113000 Phaseolus vulgaris HOM05D001006 ORTHO05D000868 2.2e-07 58.5 40 62.5
SalBow2G1923 Salvia bowleyana HOM05D001006 ORTHO05D000868 2.2e-07 58.5 39 66.7
arahy.Tifrunner.gnm1.ann1.9AD5I3 Arachis hypogaea HOM05D001006 ORTHO05D000868 2.9e-07 58.2 35 68.6
arahy.Tifrunner.gnm1.ann1.USU7SK Arachis hypogaea HOM05D001006 ORTHO05D000868 2.9e-07 58.2 35 68.6
CANSAT11G2496 Cannabis sativa HOM05D001006 ORTHO05D000868 2.9e-07 58.2 39 64.1
Cfa013526 Carpinus fangiana HOM05D001006 ORTHO05D000868 2.9e-07 58.2 38 68.4
Peaxi162Scf00628g00412 Petunia axillaris HOM05D001006 ORTHO05D000868 2.9e-07 58.2 35 71.4
Dinv01225 Davidia involucrata HOM05D001006 ORTHO05D000868 3.8e-07 57.8 34 70.6
Thhalv10025307m.g Eutrema salsugineum HOM05D001006 ORTHO05D000868 3.8e-07 57.8 54 46.3
Lsat_1_v5_gn_9_78940 Lactuca sativa HOM05D001006 ORTHO05D000868 3.8e-07 57.8 41 58.5
Medtr3g110530 Medicago truncatula HOM05D001006 ORTHO05D000868 3.8e-07 57.8 34 73.5
QL02p096914 Quercus lobata HOM05D001006 ORTHO05D000868 3.8e-07 57.8 38 65.8
SMO169G0109 Selaginella moellendorffii HOM05D001006 ORTHO05D000868 3.8e-07 57.8 36 66.7
vmacro06029 Vaccinium macrocarpon HOM05D001006 ORTHO05D000868 3.8e-07 57.8 38 65.8
Cc06_g13610 Coffea canephora HOM05D001006 ORTHO05D000868 4.9e-07 57.4 35 71.4
DCAR_019340 Daucus carota HOM05D001006 ORTHO05D000868 4.9e-07 57.4 41 68.3
Lsat_1_v5_gn_1_321 Lactuca sativa HOM05D001006 ORTHO05D000868 4.9e-07 57.4 48 56.2
Nn8g40400 Nelumbo nucifera HOM05D001006 ORTHO05D000868 4.9e-07 57.4 38 68.4
Prupe.1G091600 Prunus persica HOM05D001006 ORTHO05D000868 4.9e-07 57.4 38 65.8
Thecc.08G081500 Theobroma cacao HOM05D001006 ORTHO05D000868 4.9e-07 57.4 35 71.4
CSS0050266 Camellia sinensis var. sinensis HOM05D001006 ORTHO05D000868 6.5e-07 57.0 35 65.7
Nitab4.5_0001614g0150 Nicotiana tabacum HOM05D001006 ORTHO05D000868 6.5e-07 57.0 35 68.6
Nitab4.5_0008009g0010 Nicotiana tabacum HOM05D001006 ORTHO05D000868 6.5e-07 57.0 35 68.6
Sc18g0003400 Simmondsia chinensis HOM05D001006 ORTHO05D000868 6.5e-07 57.0 40 62.5
Atru.chr7.737 Acer truncatum HOM05D001006 ORTHO05D000868 8.4e-07 56.6 38 65.8
Actinidia17325 Actinidia chinensis HOM05D001006 ORTHO05D000868 8.4e-07 56.6 38 63.2
Actinidia38644 Actinidia chinensis HOM05D001006 ORTHO05D000868 8.4e-07 56.6 38 63.2
CiPaw.07G189300 Carya illinoinensis HOM05D001006 ORTHO05D000868 8.4e-07 56.6 38 65.8
Glyma.06G218100 Glycine max HOM05D001006 ORTHO05D000868 8.4e-07 56.6 35 68.6
Rhsim03G0262900 Rhododendron simsii HOM05D001006 ORTHO05D000868 8.4e-07 56.6 37 64.9
RcHm_v2.0_Chr4g0403551 Rosa chinensis HOM05D001006 ORTHO05D000868 8.4e-07 56.6 35 68.6
VMungo1309G2043 Vigna mungo HOM05D001006 ORTHO05D000868 8.4e-07 56.6 35 68.6
EL10Ac1g02331 Beta vulgaris HOM05D001006 ORTHO05D000868 1.1e-06 56.2 56 44.6
CSS0039360 Camellia sinensis var. sinensis HOM05D001006 ORTHO05D000868 1.1e-06 56.2 41 53.7
Glyma.04G146800 Glycine max HOM05D001006 ORTHO05D000868 1.1e-06 56.2 35 68.6
Glyma.06G089100 Glycine max HOM05D001006 ORTHO05D000868 1.1e-06 56.2 34 70.6
HanXRQChr15g0485471 Helianthus annuus HOM05D001006 ORTHO05D000868 1.1e-06 56.2 35 65.7
Manes.18G051900 Manihot esculenta HOM05D001006 ORTHO05D000868 1.1e-06 56.2 41 61.0
Aqoxy7G03139 Aquilegia oxysepala HOM05D001006 ORTHO05D000868 1.4e-06 55.8 34 70.6
Lj6g0027805 Lotus japonicus HOM05D001006 ORTHO05D000868 1.4e-06 55.8 38 63.2
Potri.018G096035 Populus trichocarpa HOM05D001006 ORTHO05D000868 1.4e-06 55.8 38 63.2
Sabra18G0082200 Salix brachista HOM05D001006 ORTHO05D000868 1.4e-06 55.8 39 59.0
TPR.G5294 Trifolium pratense HOM05D001006 ORTHO05D000868 1.4e-06 55.8 35 68.6
Actinidia10242 Actinidia chinensis HOM05D001006 ORTHO05D000868 1.9e-06 55.5 35 60.0
Duzib116G0936 Durio zibethinus HOM05D001006 ORTHO05D000868 1.9e-06 55.5 38 63.2
Lsat_1_v5_gn_7_51841 Lactuca sativa HOM05D001006 ORTHO05D000868 1.9e-06 55.5 43 51.2
Oeu020977.1 Olea europaea HOM05D001006 ORTHO05D000868 1.9e-06 55.5 35 68.6
SalBow6G0511 Salvia bowleyana HOM05D001006 ORTHO05D000868 1.9e-06 55.5 38 65.8
SalBow6G5585 Salvia bowleyana HOM05D001006 ORTHO05D000868 1.9e-06 55.5 38 65.8
Zm00001eb040870 Zea mays HOM05D001006 ORTHO05D000868 1.9e-06 55.5 38 63.2
Dinv41276 Davidia involucrata HOM05D001006 ORTHO05D000868 2.5e-06 55.1 38 63.2
FvH4_4g08890 Fragaria vesca HOM05D001006 ORTHO05D000868 2.5e-06 55.1 35 65.7
FAN12G4171 Fragaria x ananassa HOM05D001006 ORTHO05D000868 2.5e-06 55.1 35 65.7
Glyma.04G087400 Glycine max HOM05D001006 ORTHO05D000868 2.5e-06 55.1 34 67.6
Nitab4.5_0001212g0120 Nicotiana tabacum HOM05D001006 ORTHO05D000868 2.5e-06 55.1 52 51.9
Os08g0447300 Oryza sativa ssp. japonica HOM05D001006 ORTHO05D000868 2.5e-06 55.1 41 61.0
Phvul.009G206000 Phaseolus vulgaris HOM05D001006 ORTHO05D000868 2.5e-06 55.1 35 65.7
Psat1g023840 Pisum sativum HOM05D001006 ORTHO05D000868 2.5e-06 55.1 35 65.7
Sp7g23800 Schrenkiella parvula HOM05D001006 ORTHO05D000868 2.5e-06 55.1 35 68.6
CARHR233220 Cardamine hirsuta HOM05D001006 ORTHO05D000868 3.2e-06 54.7 35 65.7
Ciclev10008201m.g Citrus clementina HOM05D001006 ORTHO05D000868 3.2e-06 54.7 38 63.2
DCAR_020041 Daucus carota HOM05D001006 ORTHO05D000868 3.2e-06 54.7 35 65.7
Eucgr.C02420 Eucalyptus grandis HOM05D001006 ORTHO05D000868 3.2e-06 54.7 34 70.6
HanXRQChr03g0069031 Helianthus annuus HOM05D001006 ORTHO05D000868 3.2e-06 54.7 35 65.7
THA.LOC104811811 Tarenaya hassleriana HOM05D001006 ORTHO05D000868 3.2e-06 54.7 34 67.6
TWI36G1272 Tripterygium wilfordii HOM05D001006 ORTHO05D000868 3.2e-06 54.7 41 61.0
AL7G27270 Arabidopsis lyrata HOM05D001006 ORTHO05D000868 4.2e-06 54.3 35 65.7
AT4G25770 Arabidopsis thaliana HOM05D001006 ORTHO05D000868 4.2e-06 54.3 35 65.7
BcaC09g50746 Brassica carinata HOM05D001006 ORTHO05D000868 4.2e-06 54.3 35 65.7
BcaNung04115 Brassica carinata HOM05D001006 ORTHO05D000868 4.2e-06 54.3 35 65.7
A01p17010 Brassica napus HOM05D001006 ORTHO05D000868 4.2e-06 54.3 35 65.7
BolC1t02056H Brassica oleracea HOM05D001006 ORTHO05D000868 4.2e-06 54.3 35 65.7
BraA01t01657Z Brassica rapa HOM05D001006 ORTHO05D000868 4.2e-06 54.3 35 65.7
Carub.0007s1519 Capsella rubella HOM05D001006 ORTHO05D000868 4.2e-06 54.3 35 65.7
Migut.J01471 Erythranthe guttata HOM05D001006 ORTHO05D000868 4.2e-06 54.3 38 63.2
Peaxi162Scf00942g00119 Petunia axillaris HOM05D001006 ORTHO05D000868 4.2e-06 54.3 35 68.6
Hund26376 Selenicereus undatus HOM05D001006 ORTHO05D000868 4.2e-06 54.3 38 63.2
CARHR010040 Cardamine hirsuta HOM05D001006 ORTHO05D000868 5.5e-06 53.9 37 64.9
MBI16_g05026_MAGBIO Magnolia biondii HOM05D001006 ORTHO05D000868 5.5e-06 53.9 42 59.5
PGR102G0578 Punica granatum HOM05D001006 ORTHO05D000868 5.5e-06 53.9 34 67.6
Solyc07g006690.3 Solanum lycopersicum HOM05D001006 ORTHO05D000868 5.5e-06 53.9 35 68.6
Sopen07g002790 Solanum pennellii HOM05D001006 ORTHO05D000868 5.5e-06 53.9 35 68.6
PGSC0003DMG400027478 Solanum tuberosum HOM05D001006 ORTHO05D000868 5.5e-06 53.9 35 68.6
TWI34G0927 Tripterygium wilfordii HOM05D001006 ORTHO05D000868 5.5e-06 53.9 38 63.2
CSS0012871 Camellia sinensis var. sinensis HOM05D001006 ORTHO05D043306 7.1e-06 53.5 33 66.7
Cc10_g07900 Coffea canephora HOM05D001006 ORTHO05D000868 7.1e-06 53.5 35 62.9
Lj9A689G38 Lonicera japonica HOM05D001006 ORTHO05D000868 7.1e-06 53.5 39 59.0
HPP92_018336 Vanilla planifolia HOM05D001006 ORTHO05D000868 7.1e-06 53.5 38 57.9
ECA236G2292 Erigeron canadensis HOM05D001006 ORTHO05D000868 9.3e-06 53.1 36 63.9
Nitab4.5_0000244g0170 Nicotiana tabacum HOM05D001006 ORTHO05D000868 9.3e-06 53.1 35 68.6
GSVIVG01029120001 Vitis vinifera HOM05D001006 ORTHO05D000868 9.3e-06 53.1 35 62.9


User provided reference genes

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